FMO05813.5prime Sequence
824 bp (821 high quality bases) assembled on 2008-09-02
> FMO05813.5prime
ATTATACGAAGTTATCAGTCGACATGTTTGGATCGCTTCTACTGGGGATT
GCCACCTTGCTGGGCGCGATCTATGCCTTTCTGGTCTCGAACTTTGGCCA
CTGGCGGCGTCGCGGAGTCACAGAACCCAGAGCCCTGCCGCTCTTCGGTT
CCTTTCCCAACATGATTTGGCCACGCCAGCACTTCACCATGGACATGCGC
GATATCTATATGCATTACAGGAATACCCATAGCTATGTGGGCTGCTACCT
GTTGCGTGCACCCAAGCTGCTCGTCCTGGAACCACGCCTTGTGTACGAGA
TCTATGTGAGCGCGTTCAGTCATTTCGAGAACAACGATGCCTCCAAGATG
GTGGACATCGCCAAGGATCGTTTGGTCGCCCTCAATCCATTCGTGCTCGA
GGGCGAAGAGTGGCGCCACCAGCGGGCGGTCTTCTCCACTCTGCTGACCA
ACGGTCGCATCCGCACCACCCATGCCATCATGCAGCGTGTCTGTCTGGAT
CTCTGTCAGTTCATTGCGATAAAAGTCGGCTGGAGGCAAGGATCTGGACT
GCATTGATCTGGGTCTTCGCTTCACGGGTGAATCGCTGTTTGACTGCGTC
CCTGTGCATCCAAGCGCGCACCTTCACCGACAATCCACTGCCGGTTGTGC
GGCAAAACCCACGAGATGTCCCGCCGAGAATCGCGGATTTGGCCATTGCC
GGCGCCGTCCATGGCCTCTTCCCGAAATCTTCCGCGCTGGCTGCGTCCCA
AGGTCTTCCCCGTTCCCCACGATCGACTCTACGGCCAGATGATTAGCAAA
GCTCTGCGCCTGCGTCGTTCCAAG
FMO05813.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp28c1-RB | 1665 | CG1895-RB | 2..797 | 23..824 | 3770 | 98.6 | Plus |
| Cyp28c1-RA | 1543 | CG1895-RA | 2..797 | 23..824 | 3770 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11839858..11840203 | 212..558 | 1685 | 99.7 | Plus |
| X | 23542271 | X | 11840262..11840522 | 559..824 | 975 | 95.5 | Plus |
| X | 23542271 | X | 11839604..11839798 | 18..212 | 960 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:17:00 has no hits.
FMO05813.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:20 Download gff for
FMO05813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28c1-RA | 2..797 | 23..824 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:37:34 Download gff for
FMO05813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28c1-RA | 1..795 | 24..824 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:49 Download gff for
FMO05813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28c1-RA | 2..797 | 23..824 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:49 Download gff for
FMO05813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11840262..11840522 | 559..824 | 96 | | Plus |
| X | 11839604..11839797 | 18..211 | 99 | -> | Plus |
| X | 11839858..11840203 | 212..558 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:20 Download gff for
FMO05813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11733637..11733830 | 18..211 | 99 | -> | Plus |
| arm_X | 11733891..11734236 | 212..558 | 99 | -> | Plus |
| arm_X | 11734295..11734555 | 559..824 | 96 | | Plus |
