FMO05815.5prime Sequence
1260 bp (1024 high quality bases) assembled on 2008-09-02
> FMO05815.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCCTGGCCAA
CGGGGGAGAGGATAGAATGGACGACAGCAGCAGCGGACGCACTTCGCTGG
CGGACAGCGCCAGCCTGACGAACTCCTCGCTGCGCAGCGGCACCTCCTCG
CAGAGCATCCACACCAACGATGGCACAATCCGTGTGTTCAACTTCACCAC
CGGCGAATTTGAGCGTTTCCATCCCAACATGCTGTGCGAGGAGATCTGCA
ATACGATGTGCCGCCAGCTGGGCATTGCACCAATTGCCCAGCTGCTCTAC
GGAATACGGGAGCACTCGACATCGCGACGTCCCTCGCCGCTGGTGCGTTT
GGATCTGACGTGGTGCCTGCCCGGCGAGCGACTCAACTGCCAGCTGGTCT
ATTGCTTTCGGATGCGTTTCCGTGTGCCCGAATTGGATAGCCAGCTGGAG
TTGATCGATGGACGGAGCCACAAGTTCCTCTACCGCCAAATGCGCTACGA
TATGCGGACCGAGCAAATCCCGGAGATTCGCTATCCGGAGCACAAGGACA
AATCAACGGGACTGGCCGTGATGGATATGCTAATCGACGATCAGGAACAG
TCGGAGGATCAGCAGGCGATGCGCTCCATCGAGAAGCTTTACAAACTGTA
TTTGCCACCGAGCTTGTGGCGCGCCCACAGCTTCTTTGTGGGCTCCAAGA
TACGTGAGGTTTTCCGCAGTCTAAAAGCGAATTCGCTGAGTGTGGAGCGT
TTGAAGTGGCACTATGTGCATCACGTATCCCATTTGGCGCCCACCTATAT
GACCGAACAGTTCACCTGCACCGTTCAGTATCTGCCCAACGAGGAGGTGG
CCCGCGGTAGCGGACCCATCGGCACCAGTCTGGCCCACCTCGACGTCGAC
GCTGGCCAGTTCTGGATCGACCAACACTCTGTCCACGCTCACCACCAACA
CAAATCCGTTGCACTCGCCGCAGTGCAGAAGGCCAACGACGTTCCACCAG
CGTTGAATCGATGTCTATGTGCGAGTTTTCCACACGATTCCCTGAGCCTG
ACCCAAGGTGGCCGGGTCACCTCCGAAGCCCACCTCAAGTGATCCTGTGG
CCAGTGAGAATTTTATGATCTCCAAATCACGACACCCTCGGGCGCTGATC
GTTGACTGCCCAAGCCTCGAATGCATTTCAACGAAAGGAATGATCCTCAC
TCCTACTGGAATCATCCAATGTCAGACAATGTGATGCGGTATCTGTGTCA
TACTCTACAC
FMO05815.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hop-RA | 5055 | CG1594-RA | 636..1755 | 36..1136 | 4940 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11366410..11367463 | 1080..36 | 4655 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:11:02 has no hits.
FMO05815.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:24 Download gff for
FMO05815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hop-RA | 629..1763 | 27..1144 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:37:36 Download gff for
FMO05815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hop-RA | 628..1762 | 27..1144 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:44 Download gff for
FMO05815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hop-RA | 629..1763 | 27..1144 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:44 Download gff for
FMO05815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11366394..11367470 | 27..1096 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:24 Download gff for
FMO05815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11260427..11261503 | 27..1096 | 97 | | Minus |
