FMO05819.5prime Sequence
1244 bp (1062 high quality bases) assembled on 2008-09-02
> FMO05819.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGAATCGTAGGGGTTT
GAACGCTGGCAATACGATGACTTCTCAAGCGAACATTGACGACGGCAGCT
GGAAGGCGGTCTCCGAGGGCGGATCAATGCTGCCCGCGTCCAATTCGGCG
GTCCTCAATCCGGACGGGAGCAACCAGAGCGGCTTCGCGCAGGGCGGCCT
GCCGTACAACTCGGCCGGGAATCCGTACCCGCCCGCCGGCCAATCCTCGC
CAGCCGGCAACCAGTCCATCGTGTTCCAGAACTCCAACCAGCCTGGCTCG
AACACACCTCAGTATACCTCCTCACCTGCTCCCTCGGGCTCATCGACACC
CGGACCTGTTGGTGCGCAGAACATTCCCGGCAACTACCCGCAGTCGGCGA
CGGCGGGCAATTTCAATGGTCCAGTTGGCGGGCCCTTCGGCTCGCCATCC
TCGGGACTCGGCCAGTTCAGCCGGCCGGCCAGCTCGGGCACTCCGTTTAA
CAGTGGCCAGGCCGGGCACTTCTCATCGCCCACGGTATTCAGCGTTGGCG
GGCAATTCAATCCGATGCCGCCGGCGTCGCCATTCGGCCACGGAGGCAAC
CACCCGATGATGGGCGGGCCGCAGCAGATGGAACGCATCGACCAGGGCTT
CAGGCGGCACAATTCCTACTTTAGCCACACGGAACACCGCGTCTTTGAGC
TAAACAAGCGGCTGCAGCAGCGCAACGAGGAGAGCGACAACTGCTGGTGG
GACTCGTTTACCACGGAGTTCTTCGAGGATGATGCCCGGCTGACCATTCT
GTTCTGCCTGGAGGACGGACCGAAGCGGTACACCATCGGGCGCACGCTCA
TCCCGCGCTTCTTCCGCAGCATATACGAGGGCGGCGTTTCGGACCTGTAC
TTTCAGCTGAAGCATGCCAAGGAGTCGTTCCACACACGTCCATCACGTTG
GACTGCGACCAGTGCACGTGATCACCCAGCACGGCAAGCCCTTCTCACGA
AGTCTGCCGCCGACGCAGACTGATCTTGAGTTATGTACGACGACTACATG
CGCATCAAGTCATGCACATAACAATCAGGGAACCGCGAGCTCATTCAGTT
CGTGATCGCACCAGTCTGCGCCTGACGATGCTGCTAGATCAAATACAGAC
TCACGCGGCCTGACTCACAACTCACCCTCATTGCCTTCCTCCTACCGATC
GGACCTAAGTCGGCCAAGGCATTACCCAGTTGAATCGCCGTAAG
FMO05819.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chi-RB | 2125 | CG3924-RB | 125..1253 | 33..1145 | 5160 | 98.1 | Plus |
| Chi-RA | 2156 | CG3924-RA | 156..1284 | 33..1145 | 5160 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24032410..24033538 | 1145..33 | 4805 | 97.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:00:05 has no hits.
FMO05819.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:46 Download gff for
FMO05819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RA | 152..1288 | 26..1153 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:37:42 Download gff for
FMO05819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RB | 121..1257 | 26..1153 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:30 Download gff for
FMO05819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RA | 152..1288 | 26..1153 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:30 Download gff for
FMO05819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24032410..24033542 | 26..1145 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:46 Download gff for
FMO05819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19919933..19921065 | 26..1145 | 97 | | Minus |
