FMO05820.5prime Sequence
629 bp (629 high quality bases) assembled on 2008-09-02
> FMO05820.5prime
CGTATAGCATACCTTATACGAAGTTATCAGTCGACATGCAGGCGATCAAG
TGCGTCGTCGTGGGCGACGGAGCCGTGGGAAAGACCTGCCTGCTGATCAG
CTACACGACCAATGCCTTTCCCGGCGAGTACATACCCACCGTGTTCGACA
ACTACTCGGCCAACGTGATGGTGGACGCCAAGCCCATCAACCTGGGCCTG
TGGGATACGGCCGGGCAGGAGGACTACGACCGACTGAGGCCACTGTCTTA
TCCCCAGACCGATGTCTTCCTCATCTGCTTCTCGCTGGTGAATCCGGCAT
CGTTCGAGAACGTGCGGGCCAAGTGGTATCCGGAGGTGCGCCACCACTGC
CCCAGCACGCCCATCATCCTGGTGGGCACCAAGCTGGATTTGCGCGACGA
CAAGAACACAATCGAAAAGCTGAGGGACAAGAAACTGGCGCCCATCACCT
ATCCGCAGGGCCTGGCCATGGCCAAGGAAATCGGAGCGGTCAAGTATCTG
GAGTGCTCGGCCCTGACGCAGAAGGGTCTGAAAACCGTTTTCGACGAGGC
CATCCGGTCGGTTTTGTGCCCCGTGCTGCAGCCCAAGTCCAAGCGCAAGT
GCGCCCTGCTCGCAAGCTTTCTAGACCAT
FMO05820.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rac1-RB | 1805 | CG2248-RB | 337..913 | 35..611 | 2885 | 100 | Plus |
| Rac1-RA | 1718 | CG2248-RA | 337..913 | 35..611 | 2885 | 100 | Plus |
| Rac2-RB | 2429 | CG8556-RB | 680..1198 | 35..553 | 1545 | 86.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1301771..1302347 | 611..35 | 2885 | 100 | Minus |
| 3L | 28110227 | 3L | 7433993..7434511 | 553..35 | 1545 | 86.5 | Minus |
| X | 23542271 | X | 19697956..19698235 | 34..313 | 455 | 77.5 | Plus |
| X | 23542271 | X | 19698352..19698538 | 369..555 | 230 | 74.9 | Plus |
| 3R | 32079331 | 3R | 27638122..27638297 | 192..367 | 220 | 75 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:30:25 has no hits.
FMO05820.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:11 Download gff for
FMO05820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rac1-RA | 331..916 | 31..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:25 Download gff for
FMO05820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rac1-RA | 331..916 | 31..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:44 Download gff for
FMO05820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rac1-RA | 331..916 | 31..615 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:44 Download gff for
FMO05820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1301767..1302357 | 26..615 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:11 Download gff for
FMO05820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1301767..1302357 | 26..615 | 98 | <- | Minus |
