FMO05824.5prime Sequence
1254 bp (1020 high quality bases) assembled on 2008-09-02
> FMO05824.5prime
ATAGCATACCTTATACGAAGTTATCAGTCGACATGGCGACCAACACGGAG
CTGCTGCCCTTCCATCATCAAACAATCGCGGTGTTGAACAATCTGAATAG
CCACTGTGGCGGATCCGGGAGCAACGGAGCGGCCACCAGTGGCGGCGCGG
CGATTGGCGGAGCAGGAGCCGGAGGAGCGCCCAGCTGGGCCATGGACGAA
CTCTATCAACAGACTGAGCTGCCCGGTCTGACGCGAACCGGAGCCACCAC
CACCCACCACCACCTGCTGCGCTTCACGCCCTACGCCCTGCACCACCGAC
CGCCGCACCACCAGCTGCAGACCTTGCCGCCGGCCCTCTACTTGCAGCAT
GCCGCAGCAGCTGCGGCGGCAGCGGCAGCAGCAGCGGCCCACGCCCAGCA
CCATCATCACCATCACCACCATCTCCCGCACAGACCAGCATCTCCGGAGA
GCCCGCCGCCGGTGGAGGGCACCCACATAAGCAACCTGTTCCCAGAACTC
CTCGAGCAGATATTCGAGCACCTACCAGTGAGGGATTTGGGTCGGGCAGC
TCAGGTTTGCACCGCATGGCGGGATGCGGCCTATGCCAAGAGCGTTTGGA
AGGGAGTCGAGGCCAAGCTGCACCTTAAGCGTTCCAGTCCGAGCCTGTTC
AACTGCCTGGTCAAGCGCGGCATCAAGAAGGTGCAGATCCTATCGCTGCG
CCGCTCGCTTAAGGATTTGGTCCTGGGCGTTCCGGCTCTGACCTCTCTGA
ACCTGAGCGGCTGCTTCAACGTGGCGGACATGAACCTGGGCCATGCCTTT
AGCGTGGATCTGCCAAACCTCAAGACACTGGACCTTCTCCCTCTGTAAAC
AGATCACGGAAACGAGTCTGGGGCGCATCGCCCAGCATCTAAGGATCTTG
AGACCCTGGAACTGGGCGGCTGTTGCAACATCACGAAACACAGGACTGCT
GCTCATTGCGTGGGGGCCTGAAGAAGCTGAAGCACCTCAATCTGCGCTCC
TGCTGGCCACATCAGCGACCAGGGAATCGGAAACCTGGGCTGGTTTTCCT
GCCGGGAACCGACGAAAGGCAACCTGCAACTGGAGAACTTGCGATCTGCA
GGAATTGCCGCGGCTAGCGAACAAAGCTTTGGACCCAATTGGCCCAGGCC
TGACACTCCTTGAATTCGAATACACCTGAAGCTTTCTTGGTTTCTCGGTG
TAGCGGACTCGAGTACTTAAATAGACTCCCTGTGGCCTCCGCGAGAGATG
ATTC
FMO05824.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppa-RC | 4033 | CG9952-RC | 267..1395 | 33..1169 | 5030 | 96.9 | Plus |
| Ppa-RB | 3463 | CG9952-RB | 267..1395 | 33..1169 | 5030 | 96.9 | Plus |
| Ppa-RA | 3463 | CG9952-RA | 267..1395 | 33..1169 | 5030 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22687607..22688721 | 1154..33 | 4795 | 96.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:24:20 has no hits.
FMO05824.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:59 Download gff for
FMO05824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ppa-RA | 259..1348 | 26..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:37:32 Download gff for
FMO05824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ppa-RA | 245..1334 | 26..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:50 Download gff for
FMO05824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppa-RA | 259..1348 | 26..1120 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:50 Download gff for
FMO05824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22687719..22688726 | 26..1038 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:59 Download gff for
FMO05824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18575224..18576231 | 26..1038 | 99 | | Minus |
