FMO05826.5prime Sequence
580 bp (580 high quality bases) assembled on 2008-09-02
> FMO05826.5prime
TAGCATACATTATACGAAGTTATCAGTCGACATGGTCGAGACCGTTGTCA
ATATCGAGCGCACAACAACAACAACGACGAACGGACCGCCAGGTGGAGCG
AACCCGACCGTTGGCAGCGGTGGCGGCTTCTGGAGCGCCATTCGCCTCAA
CATCGACTATTTCCGCACCATACCGGGCATCATCAAAATTGTGGAGTTTG
TGCTGGGCATCATCTGCATGGCCCTGGCAGCTCCTCCACTGGCCTCGGCC
ACCTCGTTCTTCATGTTCGTCATCGTCATCTCGTTCATCATCAACATTCT
GCTGATCGCCGCCTATTTCCTGGGCATTCGCGAGGCCCTCAACGTGGCCG
TCAACTGGATATTCTCGGAGCTGATCACCACCGCTGTGCTGACGCTGCTG
TACTTCATCGGATTCATCGTCCAGCTGGCCAGATGGTCGGATGCCACGGG
CAAGGGTTCCGGTTCGAATACCGCCGCCGGTGTCTTTGGACTCTTCAATT
TCCTGGCATACGCGGCGGGCACGTACTTCCTGTTCCTGGCCCACAGGTCC
GGGGCTACCCACGCAAGCTTTCTAGACCAT
FMO05826.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15211-RE | 1135 | CG15211-RE | 232..762 | 32..562 | 2640 | 99.8 | Plus |
| CG15211-RD | 1136 | CG15211-RD | 233..763 | 32..562 | 2640 | 99.8 | Plus |
| CG15211-RC | 1197 | CG15211-RC | 294..824 | 32..562 | 2640 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10778210..10778405 | 367..562 | 965 | 99.5 | Plus |
| X | 23542271 | X | 10772999..10773169 | 32..202 | 855 | 100 | Plus |
| X | 23542271 | X | 10777961..10778129 | 200..368 | 845 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:30:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 1745..1803 | 63..121 | 107 | 69.4 | Plus |
FMO05826.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:01 Download gff for
FMO05826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15211-RC | 287..828 | 24..567 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:37:51 Download gff for
FMO05826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15211-RA | 278..819 | 24..567 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:12 Download gff for
FMO05826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15211-RC | 287..828 | 24..567 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:12 Download gff for
FMO05826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10777961..10778128 | 200..367 | 100 | -> | Plus |
| X | 10778211..10778409 | 368..567 | 98 | | Plus |
| X | 10772992..10773166 | 24..199 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:01 Download gff for
FMO05826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10667025..10667199 | 24..199 | 97 | -> | Plus |
| arm_X | 10671994..10672161 | 200..367 | 100 | -> | Plus |
| arm_X | 10672244..10672442 | 368..567 | 98 | | Plus |
