FMO05827.5prime Sequence
1250 bp (1066 high quality bases) assembled on 2008-09-02
> FMO05827.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCGACAAAGGCG
GTTTTCCCCACCTTCTTCAACAAGGAGACCCAGGTCTGGAGTGGCCCGCC
ACGGCCCACGGTCTACGACCACAACACCTCGGTCGGTCAGATCGTGTTCA
ACTCCCTGAGGTGCTGGCCCACCAATGTGATTCAGATCACCGACGACGAC
GGCACCGTGCTGACCAACGCCGACATGCTGGCCTACGCCACCCGGATTGC
CCTATTCTTTAAGAGCGAGGGCTTGACCCAGGAGGACCGCGTCGGGATCA
TCGCCAACTCGAGCACCTTCGTGATCCCCGTGGCCACCGCCTGCTTCTTC
CAGGCCACGCCCTTCCACGCCGTCAACTACTCCAGGGAGCCGGCCATCGT
ACAGGGTCTCTACTCGGTGACCAAACCCAAGATCATGTTCATCGACGGTC
CGGACTACGACCGCATCAAGGAGATCACCAAGGAGTGGTCTCCCAAGCTG
ATCACGCTCACGGGTAAAGTGGAGGGCGTTACTAGCATCGAGGACCTCGT
AAAGCCCCATCCCGCCGAGAAGATCTATGTACCTGCTTCCCTGGCCACTG
GTGGCGACCAGATCGCCGTGGTCCTGTGCTCCTCCGGCACTGCTGGCTTG
CCCAAGGCAGTTGCCCTCTCCCACCGCCACATTGCATCCACCAACTCGCT
GTGCATCAGTACCGATGTGCTGTACACCAGTGCCACCATCGACTGGATGA
CCGGATTCTCGATTACCGTAATGAATCTCACATGTGGCTTCACTCGCATC
ATATCCAGGAGGACATTTAGCGCCGAGACGGCTCTCTACCTGGTCAGCAA
GTACAAGGTCACCTGCCTGGCAATGGCGCCATGGCAGCCTACGAGCTCTT
CACCAGTCCACTGGCCACCAGCGAGCAACTGGAGTCCCTGAAGATAGCCT
TCGTGATTGGAGGATGGATATCCCTGGCACTACTGCGGCGGGCCCAGGAG
CTGCTGCCCAGACCTACGTGATGTCTCGTACGAACCACGAGACGAGTGTG
ACCATCAACATCGACACGTCTGATGCTCTGTAGGCAACTGCGCCGGCATG
AAGATCAAGATCAAGGCGAGATGCCAGCACCTGGCGTGAATCAACGGGCG
AGGTCTCACTCCACATCGCCCTGAATGAGCTACCTCCGCACCGAGACCGG
TCCACCCCTCAGATGTGATGACTCACCTGTGTGCACACGTGTGTCTAACT
FMO05827.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4563-RA | 1766 | CG4563-RA | 36..1195 | 36..1175 | 5205 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24452394..24452790 | 580..184 | 1985 | 100 | Minus |
| 2R | 25286936 | 2R | 24451824..24452152 | 1024..698 | 1545 | 99.4 | Minus |
| 2R | 25286936 | 2R | 24452856..24453005 | 185..36 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 24452210..24452327 | 698..581 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:30:35 has no hits.
FMO05827.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:16 Download gff for
FMO05827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4563-RA | 30..1195 | 29..1175 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:37:52 Download gff for
FMO05827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4563-RA | 27..1192 | 29..1175 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:50 Download gff for
FMO05827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4563-RA | 30..1195 | 29..1175 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:50 Download gff for
FMO05827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24451655..24452152 | 698..1175 | 94 | <- | Minus |
| 2R | 24452211..24452327 | 581..697 | 100 | <- | Minus |
| 2R | 24452394..24452788 | 186..580 | 100 | <- | Minus |
| 2R | 24452856..24453011 | 29..185 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:16 Download gff for
FMO05827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20339178..20339675 | 698..1175 | 94 | <- | Minus |
| arm_2R | 20339734..20339850 | 581..697 | 100 | <- | Minus |
| arm_2R | 20339917..20340311 | 186..580 | 100 | <- | Minus |
| arm_2R | 20340379..20340534 | 29..185 | 98 | | Minus |
