FMO05828.5prime Sequence
1277 bp (1058 high quality bases) assembled on 2008-09-02
> FMO05828.5prime
CGTATAGCATACCTTATACGAAGTTATCAGTCGACATGAACAGGGACAAT
CTGCAGCAGTGGTGGGAGAACTCGTATCGGCGCCAACATCCAGAGCCCAC
CGATGACCTCGGCCTGGACTCCGCGGAGCTGCATCTCGCCCTCCAGGAGC
CCAACCAGCTGCCCGCGGACTACGACTATGGCAACTTTAGTCTAGGCAAT
CCGTATGACGTGGACTCAGAGCACTCCATTTCCCCGCTGACGCTGCTCCT
GCTCGCTGTTAGCTATGGCCTGGTGGTTTTCGGCGGCGTCGTGGGCAACT
CCACGCTCGTTCTGACCCTCTGCTCCGCCTCTTCGGTGCGTTTGCGTAAC
CCGCTGCTGCTGGCCGTCTGCATTGCCGATCTCCTGGTCACCGGCATCTC
CGCTCCGGTCACGCTCCTCAATCTCGCGATGAACCGGAGGACGCGATCGC
TGCCCCTTGTGCTGTGCAAGGTCATACACTACGTACAGGTCATGCCCGTT
TCGGCCAGCACTATTTCGTTTTTCATGCTCTCCCTTGACCGCTACGCCAC
AGTAAAGCATCCGCGATTGGCGCAGCTTCGCCAGCGGCGCTACTTGCACG
TCTCCCTGGCGCTGCTATCCTGGCTCGCCTCTGCCGCCATCAGCACTCCC
TTTCTGTTTGCCTACAAAATCATCGCCAAGTCGATGGTGGTCAAGGGCGG
TGGGGCGGCGAACACCACGCCAAACCCGGTCAGCATCAGCTGCACCTCCG
ACCTGGGCGCCAACGCCATGTTCATGTCCTTCATCATCTTCCACACCATC
GCCGTGTTCGTGTTGCCTGGCATTGGTGTGCTACTCAACCACTACGGCGT
CCGACGCAAGCTCTGCGCCCTGTCGCTAACGGCTCGAGCTGCCCATGGAG
AGCTGCCGCTGCCCATTCCCATCCTGCGACGCCAAACCCACATGGTCATT
GTGACGGGCTGCCCAACGCCCAGCAAGCGGCCTGTGGTGGGGCACCACGG
CGGACGACACCTCGAACGGAACGGCACGGGCACCGTTGCGGTTCCATGGC
GTCAGTCGGCGAACTACAGCTTCCACAACTGCAGCCGCCCAGCAAGTCTG
CCGGATCGGCCCTCAAACGGGGCTCCTACGCTTAGACATCCCAATTACCA
AGGGCATTGAGGAAGATCCGCCACTCGAAGCCAGGCACTACCGAAGAAAG
AGGGACCGGACCGGAATCCATTGCCCTAACTTACGCTTCGATCAAGTCAC
ACCTGCTTAATGTCTACTGCTCTCGCC
FMO05828.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13995-RA | 3379 | CG13995-RA | 582..1731 | 35..1171 | 5160 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6057568..6058221 | 486..1129 | 2660 | 96.6 | Plus |
| 2L | 23513712 | 2L | 6057053..6057508 | 35..490 | 2280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:00:25 has no hits.
FMO05828.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:00 Download gff for
FMO05828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13995-RA | 582..1702 | 35..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:37:54 Download gff for
FMO05828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13995-RA | 577..1697 | 35..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:44 Download gff for
FMO05828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13995-RA | 582..1702 | 35..1143 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:44 Download gff for
FMO05828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6057053..6057506 | 35..488 | 100 | -> | Plus |
| 2L | 6057571..6058247 | 489..1152 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:00 Download gff for
FMO05828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6057053..6057506 | 35..488 | 100 | -> | Plus |
| arm_2L | 6057571..6058247 | 489..1152 | 96 | -> | Plus |
