FMO05833.5prime Sequence
409 bp (409 high quality bases) assembled on 2008-09-02
> FMO05833.5prime
GTATAGCATACCTTATACGAAGTTATCAGTCGACATGAAATTCATCGCCG
TCTGCTTCTTCGCTGTTGTGGCTGTGGCTGCTGCCAAGCCTGGACTTGTG
GCTCCTCTGGCCGCCGCTCCTCTGGCCTACACCGCTCCGGCTGTGGTGGG
CAGTGCCGCGTACGTGGCTCCCTATGCCTCCAGCTACAGCGCCCACTCGG
TGGCTCACAGCGCAGCCTTCCCAGCTGCCTACACCGCCGCCTACACCGCT
CCCGTTGCTGCCGCCTATACCGCTCCAGTGGCCGCTGCCTATGCCGCTCC
CATCGCTCCCTACGCCGCCGCCTACACCTCGCCCCTGGCCTACAGCTCTC
CCTATGTGGCCACCGCTGCCGCTCCTCTGCTGCTGAAGAAGGCAAGCTTT
CTAGACCAT
FMO05833.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13679-RB | 489 | CG13679-RB | 66..424 | 33..391 | 1795 | 100 | Plus |
| CG13674-RB | 559 | CG13674-RB | 65..317 | 33..300 | 865 | 88.4 | Plus |
| CG13674-RA | 687 | CG13674-RA | 65..317 | 33..300 | 865 | 88.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8202933..8203280 | 44..391 | 1740 | 100 | Plus |
| 3L | 28110227 | 3L | 8218602..8218842 | 300..45 | 795 | 88.3 | Minus |
| 3L | 28110227 | 3L | 8222475..8222792 | 55..360 | 775 | 83.6 | Plus |
| 3L | 28110227 | 3L | 8218581..8218639 | 297..239 | 190 | 88.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:15:43 has no hits.
FMO05833.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:57 Download gff for
FMO05833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13679-RB | 54..429 | 20..399 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:37:57 Download gff for
FMO05833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13679-RB | 52..427 | 20..399 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:41 Download gff for
FMO05833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13679-RB | 54..429 | 20..399 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:41 Download gff for
FMO05833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8202929..8203285 | 40..399 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:57 Download gff for
FMO05833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8196029..8196385 | 40..399 | 98 | | Plus |
