FMO05834.5prime Sequence
1277 bp (1088 high quality bases) assembled on 2008-09-02
> FMO05834.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTTACACTTGCT
TCATATTGGCGCGAATCATTCAAGATTGTTCTTCCGCTGCAGGCGATGAA
GCGTACGAAGGCGCAGAAGGCAGGTCCTTCCAAAAAGGCAGCAAAAAACG
AGAAGGCCAGCTCCGAGCCCAAAAGTGACCAGGAAAGCAGCGATGAGGAG
GCCTCCACATCGAAGGCTTTGTTGGTTTCTAAGCCGGATTACCAAAACTT
CGAGCAGTTTCTTACCCACTTGGAACACCAGCGAGTCTGCACGGCAGCCA
ACATACAGGAGTTCTCTTTTCGAAAGAAACGAGTGCGCGTTCTGTCCAAA
ACCGAAGATGTAAAGGAATCCAGCCTAGGCGGCGTCGTCTACTGGATGTC
CCGCGACGGGCGCGTACAGGACAACTGGGCCCTGCTCTTTGCCCAGCGTC
TGGCTCTCAAGCTGGAATTACCCTTAACTGTGGTATTTTGCCTAGTTCCC
AAATTCCTGAATGCCACTATCAGGCACTACAAATTCATGATGGGCGGCCT
GCAGGAGGTGGAGCAGCAGTGTCGCGCCCTTGACATACCGTTTCACCTGC
TGATGGGCTCCGCTGTTGAAAAGTTACCACAATTTGTGAAATCCAAGGAC
ATCGGAGCCGTAGTCTGTGACTTTGCTCCGCTGCGTTTGCCACGCCAATG
GGTCGAGGATGTGGGCAAGGCACTGCCCAAGAGCGTGCCGTTGGTGCAAG
TCGATGCTCACAATGTAGTCCCCTTGTGGGTGGCCTCCGACAAACAGGAG
TACGCTGCGCGTACCATCCGCAACAAGATCAACTCCAAGCTAGGGGAGTA
CCTCAGCGTATTCCCACCAGTTGTGCGGCATCCTCATGGAACTGGCTGCA
AGAATGTGAATACCGTGGACTGGTCAGCTGCTTATGCTTCGCTGCAGTGC
GACATGGAGTGGACGAGGTGCAGTGGGCCAGCCGGGGTTATAAGCAGCCT
GCCAGCAGCTCTACGAAGTTCTGCAGTCGTCGTTTGCGCAATTTCATGAC
AAACGAAACGATCCACGGCAAAACGCCTTGTCCGGACTCCTCGCCGGTGC
CTGCACTTTGGTTATAATTTCGGCTCAACGCTGGTGCACTGGGAGGTGGC
AGCGGATTTCAGACACACACAAAGGCTCTCGGGGGAATGCATTTGGCAGG
GAGCAATGGGGCCGCGAACTGGCGGATACCTGGCTCTCAACGGAACCCAT
ATGATATATCCTAAAGAGGGTCTAATA
FMO05834.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phr-RA | 1915 | CG11205-RA | 216..1404 | 36..1228 | 5245 | 97 | Plus |
| phr-RB | 1737 | CG11205-RB | 80..1226 | 78..1228 | 5035 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7825600..7826654 | 78..1133 | 4750 | 98.1 | Plus |
| 2R | 25286936 | 2R | 7825504..7825547 | 36..79 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:15:03 has no hits.
FMO05834.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:00:57 Download gff for
FMO05834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phr-RA | 211..1292 | 28..1112 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:37:45 Download gff for
FMO05834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phr-RA | 8..1089 | 28..1112 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:41 Download gff for
FMO05834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phr-RA | 211..1292 | 28..1112 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:41 Download gff for
FMO05834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7825600..7826634 | 78..1112 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:00:57 Download gff for
FMO05834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3713105..3714139 | 78..1112 | 98 | == | Plus |
