FMO05836.5prime Sequence
1259 bp (982 high quality bases) assembled on 2008-09-02
> FMO05836.5prime
ATAGCATACCTTATACGAAGTTATCAGTCGACATGCGGTCCACCGTCGAG
GTCAAGGGTCGCCTGCTGTTGACCCTGCTGCTACACTGCCTCGTCGCTCT
CGAGGTGTGCGGACGGGCCGGTGCCTTCACCCTCCTCTCGCCCTTTAGCT
ACAGCTCCCTGAGCTTCAAGAACCTGCTCAACTCTGTGCTGCTCTCGAGC
AACCCCAACCTGGCCGGCGGCGGAAGGAACCTCAAATCGGATGTCCTAGA
AGATGCATCCCTCATTACGCCCAAATTAATACGCAAATATGGATATCCAT
CGGAAACCCACACGGTGGTGACGAAGGATGGCTATATCCTGGAAATGCAT
CGCATTCCCAAGAAGGGAGCCCAGCCGGTTCTCCTCATGCACGGAATTCT
TGATACCTCTGCAACATGGGTGCTTATGGGACCCAAGTCAGGATTAGGCT
ACATGCTCTCCGATCTGGGCTACGACGTGTGGATGGGCAACTCTCGGGGC
AATCGGTACTCCAAGAACCACACCAGTTTGAATAGCGACTATCAGGAGTT
CTGGGACTTCACCTTCCACGAGATGGGCAAGTACGACCTTCCGGCCAATA
TCGACTACATCCTGAGCAAGACGGGATACGAGCAGGTCCACTACATCGGT
CACTCCCAGGGAACAGCCATCTTCTGGGTCCTGTGCTCCGAGCAGCCCGC
CTACACCCAGAAGATAACCTCCATGCACGCCCTGGCGCCCATCGCCTACA
TACACGACATGAAGAGCCCCCTGTTCCGCACCCTGGTCCTCTTCCTCGAC
TTTCTCACGGCCGCCACACGAATGCTGCGCATCACAGATTTCATGCCCAA
CACAAAATTCCTAGTGGACACACCAGGTTGTGTGCCACGACAACGCCATG
ACGCAGGACGTCTTGCTCAATATCCTGTTTTTGGTCGCCGGCTACAACTC
CGAACAGCTGAACAAAACCATTGCTTCCCTGTGGATGCTGAGCACACGGC
ATCAGGAAGCCCTCGATAGCAGCTGGGAGCACTTTTGGCCCAGCTGATGA
AGTCGGCCATTTCCGGAATTCGACCGCGGCATATCTGCGCAACCCAGCCT
GGAATTACACAGGATGACTCTCGCGGGAACTATGAACTTGGTCACAGGGT
GAAAGTGCCGGGTGCCCTATATTACTCGGGGGAATAGTATCTGCCTGTTC
TCCACATCGGTAAAGTAAACCTTTTTTGGCTCCGCCGAAGCTACACTCAA
TAATGATGC
FMO05836.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31871-RA | 2332 | CG31871-RA | 429..1566 | 33..1179 | 4980 | 96.9 | Plus |
| CG18301-RA | 1371 | CG18301-RA | 449..577 | 549..677 | 195 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10668691..10669055 | 446..810 | 1825 | 100 | Plus |
| 2L | 23513712 | 2L | 10662509..10662745 | 33..269 | 1185 | 100 | Plus |
| 2L | 23513712 | 2L | 10668158..10668337 | 269..448 | 900 | 100 | Plus |
| 2L | 23513712 | 2L | 10669170..10669329 | 809..966 | 610 | 95 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:06:58 has no hits.
FMO05836.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:27 Download gff for
FMO05836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31871-RA | 427..1369 | 29..971 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:37:48 Download gff for
FMO05836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31871-RA | 421..1363 | 29..971 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:25 Download gff for
FMO05836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31871-RA | 427..1369 | 29..971 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:25 Download gff for
FMO05836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10662507..10662745 | 29..269 | 99 | -> | Plus |
| 2L | 10668159..10668336 | 270..447 | 100 | -> | Plus |
| 2L | 10668693..10669054 | 448..809 | 100 | -> | Plus |
| 2L | 10669171..10669329 | 810..966 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:27 Download gff for
FMO05836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10669171..10669329 | 810..966 | 96 | -> | Plus |
| arm_2L | 10662507..10662745 | 29..269 | 99 | -> | Plus |
| arm_2L | 10668159..10668336 | 270..447 | 100 | -> | Plus |
| arm_2L | 10668693..10669054 | 448..809 | 100 | -> | Plus |
