FMO05838.5prime Sequence
1241 bp (1066 high quality bases) assembled on 2008-09-02
> FMO05838.5prime
TAGCATACCTTATACGAAGTTATCAGTCGACATGGAGGACACAAAAGCTC
CAGCGGCAGCGCAGGCGCAAAGTCATCCTTTGGAGGATGTGTCCCTCAAT
GGGAACGATGACGACAAGCAGACGCCCAAAAATTGGGTTAAATTCGACGA
CGAAGCGGATAGCGGTGAAAAAAACAATAACAGTAACGACGGCGATGCCA
CACAGCAGCAACAACAACAAAACAAGTTAACTCTGCCGCCACCGCCGTCG
GTGGTTAGTAGCAACAACAACAGGAGGGCGCGCTCGCGCAGTCCGTCCGC
TACAGTAACAACAACCACACCTGTCCAGCGCCCGGCAGTTTCCTCGACCA
CAGCTGCGACACCGGGCGAAGTGCAGCCGCATGCCCCTCCGCCGGATGTG
GCGCCCGCTGTTCTGACAACCGAGAGCACGCACGTTAATCTGAGTGCATC
CGGCAGTGGCATCGTCAGCGGAGCAAGTGCGAATGCAAGTGCGAGTGGAT
ACGCACCTGGCCCGGTCCGCCATACCCCGCAGCTACCAAACCAAAAAGCC
GCCGCCGCCCCCTCTCTATCGTCCGCTGGCGCGGCATCCTCCGGACATCA
GCATAATGGAGGTGGCGCCAACGGAACTGGAATTAGCCAGCCGGCGGACC
AGGGATCCGGGATGCGCACAATCGAATTGTCAACGGGTCGTATACGCGAG
GGATTCGCAAATGGCGATGTGATTGTCACACTTCTGCCGGCCAACACGAA
GTGGCCGTGGATAACCCCAGCCATATTCCGTCCGGAACTGGTGCCCGAGG
AGCTGATGGCTCAGGGTCTGACGCTCACTGTGGAGGACTATGTGAACGCG
ATGGAGACGCTAGTAAACGACTACCGCTTCACCGTGTACAACATCTGCTA
CAAGCGCATCCTGTCTGCTGGATCCTGTTCGCATTTACGGTTTGCTGGCC
CTGCTCTTTTCCGGACTGCAGGTGTGCCCTGTTCGCCTGGGAGTGGGCCT
GCTATTCCTGAACGCGCGCCATCTTCCTGTGCATGTGGTGAAGCTGCGCT
TGTCCGCGGCCTTGAAAGTGCTGCCAAGATGAACGGCAGCTAATGCCCAT
AAAGATCTGCTGGTCTGACGATCGGGGCGCATCTCTGCCAAGTCACTTGT
GCTCAGGGACTGAGCCACATTCTATTCTGACAGATTCTGAACTATCGGAA
GCAAACTGTTGCCGAGATAGCCCTACTGAGGCGGCACTGTG
FMO05838.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18507-RE | 2004 | CG18507-RE | 302..1428 | 32..1140 | 5065 | 97.8 | Plus |
| CG18507-RD | 2041 | CG18507-RD | 302..1428 | 32..1140 | 5065 | 97.8 | Plus |
| CG18507-RC | 2404 | CG18507-RC | 302..1428 | 32..1140 | 5065 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13667971..13668353 | 325..707 | 1915 | 100 | Plus |
| 2L | 23513712 | 2L | 13665826..13666122 | 32..328 | 1485 | 100 | Plus |
| 2L | 23513712 | 2L | 13668863..13669114 | 823..1065 | 785 | 94.8 | Plus |
| 2L | 23513712 | 2L | 13668689..13668805 | 707..823 | 585 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:05:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 2306..2338 | 82..114 | 120 | 84.8 | Plus |
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4358..4389 | 83..114 | 115 | 84.4 | Plus |
FMO05838.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:00 Download gff for
FMO05838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18507-RC | 289..1430 | 20..1145 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:38:05 Download gff for
FMO05838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18507-RB | 286..1427 | 20..1145 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:54 Download gff for
FMO05838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18507-RC | 289..1430 | 20..1145 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:54 Download gff for
FMO05838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13667975..13668353 | 329..707 | 100 | -> | Plus |
| 2L | 13668690..13668805 | 708..823 | 100 | -> | Plus |
| 2L | 13665813..13666122 | 20..328 | 98 | -> | Plus |
| 2L | 13668864..13669200 | 824..1145 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:00 Download gff for
FMO05838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13665813..13666122 | 20..328 | 98 | -> | Plus |
| arm_2L | 13667975..13668353 | 329..707 | 100 | -> | Plus |
| arm_2L | 13668690..13668805 | 708..823 | 100 | -> | Plus |
| arm_2L | 13668864..13669200 | 824..1145 | 91 | | Plus |
