FMO05839.5prime Sequence
591 bp (40 high quality bases) assembled on 2008-09-02
> FMO05839.5prime
AGCATACATTATACGAAGTTATCAATCCACATGTTCGCCAAGATTGTGCT
CGTTGCCCTCTGCGTGGCCTCTGCTCAGGCTGGTCTCCTTCCTTTCCATG
CTCCGGCTCCACTGGCTGCTCCACTTGCTCCTGCCTTCCCACCTCCCCTG
GCTGCTCCTGTGGCTACCGCCGGAGTGGTGGCTCCATATGCCTCCAACTT
CAATGCCCACCGCATCAACCACGCCGTGGCATACCCAGTGGCTCCTGCTC
CAACTACAGTGGCCTTCGCTGCTCCCCTTCCCGCTCCCCTGCCCGTTCCA
GTTGCTGCTCCCGCTCCAGTGGCCTTTGCCGCTCCTGCTCCTCTGCCAGT
GGCTGCTGCTCCTGCTCCGGTGGCCTTTGCTGCTCCCGCCAAGGTTGCCT
TCGCCGCTCCCGCTCCGGAGGCTGCTCCTCTGGGCTTCGCCCCAGCACCG
GCGCCTGTTGCCTTCGCCGCACCAGCCAATTTCGGATTCAGACCCTTCGC
CGCTCCCATGACTGCTCCAGTCACAGCGCCTCTGGCTGTGGACCACAAGT
ACGATACCGCCACATACTTCTTCCCAAGCTTTCTAGACCAT
FMO05839.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13049-RA | 736 | CG13049-RA | 65..607 | 31..573 | 2430 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16281261..16281786 | 573..48 | 2345 | 96.4 | Minus |
Blast to na_te.dros performed 2014-11-28 19:31:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\worf | 4174 | Dmir\worf WORF 4174bp Derived from AY144572. | 808..921 | 243..356 | 129 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2758..2872 | 339..222 | 115 | 56.8 | Minus |
FMO05839.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:11 Download gff for
FMO05839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13049-RA | 54..595 | 23..561 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:24 Download gff for
FMO05839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13049-RB | 116..657 | 23..561 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:22 Download gff for
FMO05839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13049-RA | 54..595 | 23..561 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:22 Download gff for
FMO05839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16281273..16281785 | 49..561 | 96 | <- | Minus |
| 3L | 16281849..16281866 | 30..48 | 94 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:11 Download gff for
FMO05839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16274373..16274885 | 49..561 | 96 | <- | Minus |
| arm_3L | 16274949..16274966 | 30..48 | 94 | -> | Minus |
