FMO05840.5prime Sequence
1262 bp (1036 high quality bases) assembled on 2008-09-02
> FMO05840.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGATCAAGGCGGCTG
CTGAGGATCGCATCTCAACAAAGAGCGTCGGGTATGCGTGGGTCTCTCCG
GAGGCCACAGTGTCCCGAACGGAGACGGTTGGCGGCGACGATATCATCGA
GTTCGAACCCAAGGAGGAGCTCGATGAGTCGGAGAAAAGCCCACTTCCCC
AAATTCATGCTGTACCATTTGCCGGCCATGACAACTTAAAAATGGAAGAA
CCTCTGCCGAGCGAGAGTCCGTTTCACAAGGACATTGCCTTCTTTGTCTG
CCGTGACCGCCAGTCATTGCAGATTGTGCAGGGCGAGGGATTCCAGCACC
TAGTGAAAGTACTGTGCCCCACCTACAGACCACCGAGTGCGGCGAAACTG
GAGGCCATTATCTGCAGGGAGTCGGAAGCGCAGAGGTCCAAGCTCTGCCA
GCAGTTGGCCGACATCTCGACACTCAGCCTAAGTTGCTCGGTGCACACGA
ATGCGGAGAGTCGAAGCTGGATGGAGCTGGTGGCCCACTTTCACGAGGGG
CGGCAACGAATCTCCCGAACTCTTTCTGTGCTGCGCCTTCCCGATCTTTT
CACCTCCAACGATCTGGTGGATCGCATGGACCAAGTGTGTCAGCGCTTCG
ACATTCCAAAGTCAAGGATCTGCTGCGTGTCGACAAGGAGCAGTCAACTA
CTGGAGGATGCGGTGACATCGTTCATGGGCGCTCATCATCATGTTCCCTG
CTTCGCAGACCAATTGAATTCTATTTTAGAGGAGGTGGTGCAGCGCCCAG
AAATACGTCATTTGCGCGACAAGGTGCGTTCCCATGTGCAGTCCACATTG
CAGCTGAATCCCCAACTGGATTCCATACACCGACCGATTAGTGTGTACAA
TATGCTAGACTTATACCTGAAACAGACTCTCGTTCAGAGCCGCTGCCGCT
TTCGACATCGGAGGTGGATTTGTGTCAGCAATTGCTGGACGTGCTGAGGC
CGTTGACCAGCTCCATGCGTGGGCTAAGTCGAACACCAATATCGGCGCAG
CACAGGCCCTGCCCATTGCCCAAACTCTGATCACGAACTGAAGCAAGAGA
AAAAGTGGCGGACAATATGCCAAGGGAAATACCGCTTGTTCCTGGTCACA
AGCTGGAGGAAATCTTCGAACGATGAGCGCAACTTTGACTGGCATGGCAG
TCGCGTGGACCACGCTTCAAAATTTTCTTCGAGTGTGGGCCTGTGTTCAC
CACTACGAGGAC
FMO05840.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:42:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16863-RA | 2237 | CG16863-RA | 441..1633 | 35..1217 | 5270 | 97.2 | Plus |
| CG16863-RB | 2184 | CG16863-RB | 388..1580 | 35..1217 | 5270 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:42:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13791665..13792537 | 232..1101 | 4065 | 98.7 | Plus |
| 2L | 23513712 | 2L | 13791399..13791595 | 35..231 | 970 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:42:58 has no hits.
FMO05840.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:17 Download gff for
FMO05840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16863-RB | 380..1555 | 25..1195 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:23 Download gff for
FMO05840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16863-RA | 429..1604 | 25..1195 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:04 Download gff for
FMO05840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16863-RB | 380..1555 | 25..1195 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:04 Download gff for
FMO05840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13791391..13791595 | 25..231 | 97 | -> | Plus |
| 2L | 13791665..13792621 | 232..1183 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:17 Download gff for
FMO05840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13791391..13791595 | 25..231 | 97 | -> | Plus |
| arm_2L | 13791665..13792621 | 232..1183 | 97 | <- | Plus |
