FMO05841.5prime Sequence
1254 bp (1075 high quality bases) assembled on 2008-09-02
> FMO05841.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTGGACCATTCT
CCTGACGATCCTAATCGCGGGTCTGCTGTACAGATATGTGAAGCGGCACT
ACACTCACTGGCAGCGATTGGGAGTCGATGAGGAGCCGGCAAAGATTCCC
TTTGGCGTAATGGATACTGTCATGAAGCAGGAACGAAGTTTGGGCATGGC
TCTGGCTGATATATACGCCCGGCACGAGGGCAAAATCGTTGGCATATACA
TGTTGAACAAACGAAGTATCCTGATCCGAGATGCCCAATTGGCTCGCCAA
ATCATGACCAGCGATTTCGCCAGTTTCCACGATCGCGGGGTGTACGTGGA
CGAGGATAAGGACCCGTTGTCGGCCAACCTTTTTAACCTAAGAGGTGCTT
CATGGCGAAATCTACGTCAGAAACTTACGCCGTCGTTCTCCTCCGGCAAA
ATTAAGGGCATGTTCGGCACCATCGACGACGTGGGCGATAAGTTGGTGCA
GCATTTGGAGGGGGCCCTTGACCAAAGCGATGAAGTGGAGATCAAGGATG
TGATGACCACGTATGCGGTGGACATCATTGGGTCAGTCATTTTTGGCTTG
GAGATAGACAGCTTCCGAAATCCAAAAAACGAGTTCCGCGAGATCAGCAG
CTCTACGTCTAGGGATGAATCTCTGCTGCTGAAGATTCACAATATGTCCA
TGTTCATTTGTCCACCGATTGCTAAGCTAATGAACCGCTTGGGCTACGAA
AGCCGCATTCTGACATCCCTGCGAGACATGATGAAGCGCACAATCGAGTT
CCGGGAGGAGCACAACGTGGTGCGAAAGGACATGCTGCAGCTGCTGATCC
GCCTCCGAATACGGGCAAGATTGGCGAGGACGACGACCAGGTGTGGGACA
TGGAAACCGCACAGGAGCAGCTGAGTCTATGTCGATCGAGAAGATTGCCG
CCCAGGCATTCCTGTCTACGTGCGGGCTCGGAATCCACAGCTGCGGCGTC
TGCTCACTCTCTACGAGCTGTCCATGTATCCGGAACTGCTGAAGAGCGCA
AGAAGAATTGAATGCTGTGCTGATGAGCACATCTGAAGCCAAGGATAGGT
CACTTACGAGGCGGTGCAGACTTAAGGTTCTGACATCTGCATCATGAAAA
CATCGCCATTACCGGCTACATTCTCAATCGAGAGGGACAGAAAATTCGGT
ACTGGACTATCAACTAGCCAGGTAACAATTCGATATACCGCTCTGTGGAG
AGCC
FMO05841.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp6d2-RA | 1759 | CG4373-RA | 113..1282 | 37..1184 | 5225 | 97.5 | Plus |
| nsr-RB | 2523 | CG3875-RB | 2149..2523 | 1146..787 | 1450 | 94.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22653738..22654418 | 717..37 | 3405 | 100 | Minus |
| 2R | 25286936 | 2R | 22653251..22653665 | 1119..717 | 1485 | 96.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:15:49 has no hits.
FMO05841.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:59 Download gff for
FMO05841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6d2-RA | 106..1295 | 28..1196 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:38:09 Download gff for
FMO05841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6d2-RA | 103..1292 | 28..1196 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:43 Download gff for
FMO05841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6d2-RA | 106..1295 | 28..1196 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:43 Download gff for
FMO05841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22653220..22653665 | 717..1147 | 95 | <- | Minus |
| 2R | 22653739..22654425 | 28..716 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:59 Download gff for
FMO05841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18540725..18541170 | 717..1147 | 95 | <- | Minus |
| arm_2R | 18541244..18541930 | 28..716 | 99 | | Minus |
