FMO05842.5prime Sequence
1259 bp (1068 high quality bases) assembled on 2008-09-02
> FMO05842.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGCCGTACACACCAG
AAAATTCCTACGATAATGATCAAAAGATCTGGAGCGGTGAGCCGGTTGTC
AAATACTTCGATCCGGACTTGTCCATCGGAGAGATAATTTTCCACGAGAT
GCGGCGGCATCCGCAGCTTACTGCCCAGATCTCTGCTACGGAGGGTACTG
TGTTGACCAGAGGGGAGCTCCTTGCCAACGCCATGCGCTTGGCCAGCTAT
ATGCGATCATTGGGACTCCTTCAATCCGATATAGTGGGCCTCATAGGCCG
GAATACCACCCACATGCTTGCCGTAGCCTACGCCTGTTTCTTCAACGGAA
TAGCTTTTCACTCACTCAACATTACATACGATCGCGATACGATCGAAAAG
ATCTACAAGGTCACAAGGCCTTCTATTATTTTCTGCGATGGAGATGAGTT
TGAGAAGGTTCGATCTGCCACTGCAGAACTGGATGTTAAGATTGTCACCA
TGCGCAATCATCCGTTGGATTCCATAAAGATCGATGAAGTTGTGGCCACG
CCCATCGAAGAAAACTTCCAGCCAGCTAAGCTGGAAAAGGGCAACGATCA
GACTTTGGCCATTCTCTGCTCTTCGGGAACAACTGGTACTCCAAAGGCAG
TAACTATAACTAACAGTCGGCACATCCTCGCAGGCAACTATCATCTGACC
ACCGCTGATGTTCAGTACTCTCACAACACCCTTGACTGGATCACTGGTTT
GCTTACCACCATTACCTCCGGAGTGTTCAGCACTACCCGCATCATTGCGG
ACAATGCCTTCGATCCCGCCTTTGCCTTGCGAATCATCGAAGAGTACAAG
GTTACGTGGACCATACAGCCACCATCATCTATGGCTCTAATGATTAACTG
CCCAGATTTCGAGACGTGCGATCTGTCGAGCCTACGTGCTACATGTTTGG
AGGATCTCGGGCTGCCTTGAGTCAGAAAGGCATCCGTAGCCGTCTAGCAT
AATTGCCTGCAGTTTGTTTATGGATTTACAGAACTGGTGCCATGGCCACC
ATCACTGTCACTTCGACGAGAAACCGGATCGGTGGGTCATTGGTCATGGG
CTAAGATGAAAATAAAAATGATGACGGCAAATCGCCTTGAACGATGAAAT
CGGAAGGGTGGCATATATGAAATACCACACTGCTCGGATCACGAACCGAT
GGAATTCATACTGCGAATCCTGGATGTTAATCCTCGGAAACTCGTATCAC
TGATTACTC
FMO05842.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11659-RA | 1705 | CG11659-RA | 51..1218 | 35..1187 | 5250 | 97.5 | Plus |
| CG6300-RA | 1724 | CG6300-RA | 51..1218 | 35..1187 | 5110 | 96.8 | Plus |
| CG11407-RA | 1789 | CG11407-RA | 63..844 | 35..816 | 1180 | 77.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19776520..19777033 | 690..177 | 2570 | 100 | Minus |
| 3R | 32079331 | 3R | 19772462..19772975 | 690..177 | 2510 | 99.2 | Minus |
| 3R | 32079331 | 3R | 19776000..19776457 | 1135..691 | 1655 | 95.9 | Minus |
| 3R | 32079331 | 3R | 19771992..19772399 | 1089..691 | 1590 | 96.1 | Minus |
| 3R | 32079331 | 3R | 19781508..19781998 | 176..666 | 940 | 79.4 | Plus |
| 3R | 32079331 | 3R | 19773032..19773175 | 178..35 | 720 | 100 | Minus |
| 3R | 32079331 | 3R | 19777087..19777230 | 178..35 | 720 | 100 | Minus |
| 3R | 32079331 | 3R | 19781308..19781441 | 35..168 | 220 | 77.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:30:48 has no hits.
FMO05842.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:23 Download gff for
FMO05842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11659-RA | 47..1184 | 27..1154 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:38:10 Download gff for
FMO05842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11659-RA | 47..1184 | 27..1154 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:54 Download gff for
FMO05842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11659-RA | 47..1184 | 27..1154 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:54 Download gff for
FMO05842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19775980..19776457 | 691..1154 | 95 | <- | Minus |
| 3R | 19776520..19777031 | 179..690 | 100 | <- | Minus |
| 3R | 19777087..19777234 | 27..178 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:23 Download gff for
FMO05842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15601702..15602179 | 691..1154 | 95 | <- | Minus |
| arm_3R | 15602242..15602753 | 179..690 | 100 | <- | Minus |
| arm_3R | 15602809..15602956 | 27..178 | 97 | | Minus |
