Clone FMO05843 Report

Search the DGRC for FMO05843

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:58
Well:43
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13060-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05843.5prime Sequence

445 bp (445 high quality bases) assembled on 2008-09-02

> FMO05843.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTTCAAATTTATCG
GCGTCATCGCTCTCCTGGTCGCCACCGCCAGTGCTGGTCTCATCGAGACT
CACCATGTGGTGCACGAGCCCGTTCTGGCCAAGGTTGGATCGGTGGTGCA
CTCTGCTCCCTCGGCGGTTTCCCACCAGAGCATCACCCAGGTGCACAGCA
AGGCGGTGGTGCAGCCAGTGGTTGCTCCTATCGTGAAGACCACCACCTAC
TCCCATCCCGCCGTTGCCGTCCATGCTGCTCCAGTGGTTCACTCCGTGCC
CGTTGTCCACGCCGCTCCTGTCGTCCACTCCGTTCACTCCGCTCCTGTGG
TGCACTCGGTGCTTCACTCCGCTCCCCTCGTCAAGTCAGTGGTGCACTCC
GCTCCTCTGGCCTACACCCTGCACCACGCAAGCTTTCTAGACCAT

FMO05843.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG13060-RA 539 CG13060-RA 71..473 35..437 1970 99.3 Plus
CG13041-RA 513 CG13041-RA 68..439 35..427 1430 91.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16319998..16320388 47..437 1910 99.2 Plus
3L 28110227 3L 16319104..16319381 330..53 1345 98.9 Minus
3L 28110227 3L 16319028..16319090 427..365 270 95.2 Minus
Blast to na_te.dros performed on 2014-11-28 19:12:12 has no hits.

FMO05843.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:59 Download gff for FMO05843.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13060-RA 63..473 25..437 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:38:12 Download gff for FMO05843.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13060-RA 58..468 25..437 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:52 Download gff for FMO05843.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13060-RA 63..473 25..437 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:52 Download gff for FMO05843.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16319998..16320388 47..437 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:59 Download gff for FMO05843.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16313098..16313488 47..437 99   Plus