FMO05844.5prime Sequence
363 bp (363 high quality bases) assembled on 2008-09-02
> FMO05844.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGCGGCGCGCATCTCG
ATTGATTCCGTTCGGTTTCGTCATCCTGCTCCTGATTCTTCTGCTCCTCC
AGCCATCGACAGACGGCCACACACTGGGCGCCAGCTGCCAGACGCCCGAG
AAGAGCGAAGGACGCTGTGTGCACTTCAGCTCCTGCCGGCTCGTCTTGCG
TCACTATGCGATGTACAAGGAGCACATGCCGCCAGCGATAATGCGATTCC
TGCAGAGGGTCCGTTGCAAGCCGAAACGCGAAGGCTATCATTTGTGCTGC
GAACTCAAAGATGTGATTCCCGCGAACGCCAACTCCAAGTTGAAGGCAAG
CTTTCTAGACCAT
FMO05844.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31337-RA | 849 | CG31337-RA | 186..497 | 34..345 | 1560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13544546..13544706 | 285..125 | 805 | 100 | Minus |
| 3R | 32079331 | 3R | 13545125..13545215 | 124..34 | 455 | 100 | Minus |
| 3R | 32079331 | 3R | 13544318..13544377 | 345..286 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:36:23 has no hits.
FMO05844.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:33 Download gff for
FMO05844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31337-RA | 165..484 | 29..349 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:38:13 Download gff for
FMO05844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31337-RA | 165..484 | 29..349 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:16 Download gff for
FMO05844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31337-RA | 181..500 | 29..349 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:16 Download gff for
FMO05844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13544314..13544377 | 286..349 | 96 | <- | Minus |
| 3R | 13544546..13544706 | 125..285 | 100 | <- | Minus |
| 3R | 13545125..13545220 | 29..124 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:33 Download gff for
FMO05844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9370036..9370099 | 286..349 | 96 | <- | Minus |
| arm_3R | 9370268..9370428 | 125..285 | 100 | <- | Minus |
| arm_3R | 9370847..9370942 | 29..124 | 97 | | Minus |
