FMO05848.5prime Sequence
811 bp (811 high quality bases) assembled on 2008-09-02
> FMO05848.5prime
TAGCATACCTTATACGAAGTTATCAGTCGACATGAGCAATACTCAGCACT
TAACTATTGGCTCGCCAAAGCCCGTATTTCCGGATGATGGGATCTTAAAG
CTGTATTCGATGCGCTTTTGCCCCTATGCACACCGTGTGCACCTGGTCCT
GGATGCCAAAAAGATTCCCTACCACGCTATCTACATCAATCTTCGCGACA
AACCCGAGTGGTTCTCCCTGGTGAGCAGCTCCACAAAGGTGCCGGCACTG
GAGCTGGTCAAGGAACAGGGAAATCCTGTGCTGATCGAGTCGCTCATTAT
TTGTGACTACTTGGACGAAAAGTATCCGGAGGTGCCATTGTATCCCAAGG
ATCTGCTTAAAAAAGCCCAGGAGAAGATTTTAATCGAACGTTTCGGACAG
TTCATCAATGCCTTCTACTACCTGTTGCTGCACGACAATCCCGAGCAGCT
GGTTGACACCGATCACTATGCCGGATTGGTCGTTTATGAGGAGGAACTGA
AGCGACGTTGTACCAAGTTCTTTGGTGGCGACAGCCCAGGCATGCTTGAC
TACATGATGTGGCCCTGGTGCGAGCGCTTTGACTCTCTGAAATACACTTT
TGAACAAAAATTCGAATTGAGTCCGGAACGTTTTCCCACTTTGATTAAGT
GGCGCGACTTGATGATCCAGGATCGTGCTGTCAAGTGTTTCTATCTGGAT
GGACAGACCCATGCCAAATACATGAACTCCCGGCGATCGGGCCAGGCCGA
TTATAATATGCTATACAATGAGGCCCAACGTGTCAAATTGGGGGCAAGCT
TTCTAGACCAT
FMO05848.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstO1-RA | 954 | CG6662-RA | 65..826 | 32..793 | 3795 | 99.9 | Plus |
| se-RA | 825 | CG6781-RA | 108..218 | 101..211 | 195 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8524134..8524718 | 643..59 | 2925 | 100 | Minus |
| 3L | 28110227 | 3L | 8523953..8524075 | 765..643 | 615 | 100 | Minus |
| 3L | 28110227 | 3L | 8520715..8520825 | 101..211 | 195 | 78.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:05:49 has no hits.
FMO05848.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:57 Download gff for
FMO05848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstO1-RA | 65..826 | 32..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:38:02 Download gff for
FMO05848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6662-RA | 60..821 | 32..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:52 Download gff for
FMO05848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstO1-RA | 65..826 | 32..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:52 Download gff for
FMO05848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8523870..8523897 | 766..793 | 96 | <- | Minus |
| 3L | 8523953..8524074 | 644..765 | 100 | <- | Minus |
| 3L | 8524134..8524717 | 60..643 | 100 | <- | Minus |
| 3L | 8524775..8524802 | 32..59 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:57 Download gff for
FMO05848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8516970..8516997 | 766..793 | 96 | <- | Minus |
| arm_3L | 8517053..8517174 | 644..765 | 100 | <- | Minus |
| arm_3L | 8517234..8517817 | 60..643 | 100 | <- | Minus |
| arm_3L | 8517875..8517902 | 32..59 | 100 | | Minus |
