Clone FMO05850 Report

Search the DGRC for FMO05850

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:58
Well:50
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG12991-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05850.5prime Sequence

959 bp (917 high quality bases) assembled on 2008-09-02

> FMO05850.5prime
AGCATACATTATACGAAGTTATCAGTCGACATGACTTTCTACTGGTGGTC
ACACTGGTTCTGGATAACCCTGATCCTGAGTGTTAACTTGCTGTCCAGCC
ATGTCCACACATATCCCAGCCAGGAGGCGGAGTCACTGACCTCCAGCCCG
CATACCCAATCCCAAACGCAGCCCGTGCGCACCACCAAGCTCTACCAAAC
GACGGTCACCCAGATGTGGGGCCCAGCCACCCAGAGCAACATCATGGACC
TGACCCACCGACCCACCACCACACGGCCGGTGGTAACCCCCAGTTATGGT
GGTGGCCCCCAATTGGCCCAGGTCCATGATGTTGAACAGGCAGTGGAGCT
GCAGGAGGAGGATGAGGTGGTGGAGGAGGAGGAGCTGCCGCTCAACGATC
GTGACCAGCAGGAGCAGGATGAGATTCCCGATCAAGAGCGCCGGCAGGAT
GAGGCAGATGCAGATCCAGATGCGGATGCGGATATCGAGGACGCTGTAGC
AAACGAGGAGCTGGCTCAATTCGAGTTCAAGCGATCGGCGGACTTCACCT
CCGACCAGCTGAATAACTTTACGAATTTTAGCAGTAGCACTAGTACAAAT
GGCAGCAGCAGCAGTAGCACCACCACAAAACCAGTTGCAATCAGCAGCAG
TAGTCCCGGCCAGCACAACAACCACCACCGCGAAAAGTGTTTGGCAACAT
CGCCCGGCAGCTGCAATAACACCACGGGGCCGGAGGCAGTGCATCCACTT
CCCACGCCCGGCTGGTTCCGCGGCTACGCCGTCCCACGCCAAAAGATTCC
ACACGGAATTGGCTATCCCAATGAACCTGCTGGCGGGTGCCAACTGGTGG
CCTGGGGTTCACGGTCCACGTCGAAGGCGAAAAGGCGCCGTTCACTCTGA
AAAATGGCATACAAAGGAAGGATGAACTTAGGCGTGGCCAAAGCGAGCAT
AATATTCGC

FMO05850.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG12991-RF 2611 CG12991-RF 280..1184 30..951 3960 96.8 Plus
CG12991-RE 2734 CG12991-RE 388..1292 30..951 3960 96.8 Plus
CG12991-RD 2713 CG12991-RD 388..1292 30..951 3960 96.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17596809..17597320 82..593 2560 100 Plus
X 23542271 X 17597384..17597726 592..951 760 89.2 Plus
X 23542271 X 17596699..17596755 30..86 270 98.2 Plus
Blast to na_te.dros performed 2014-11-28 19:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1056..1166 577..684 169 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2323..2480 580..728 164 61.6 Plus
roo 9092 roo DM_ROO 9092bp 1074..1146 580..652 157 71.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6502..6852 371..724 156 55.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6833 580..681 150 67.3 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7150..7231 598..674 119 66.3 Plus
TART-C 11124 TART-C TARTC 11124bp 8603..8684 598..674 119 66.3 Plus

FMO05850.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:43 Download gff for FMO05850.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12991-RD 388..1298 30..959 96   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:38:22 Download gff for FMO05850.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12991-RB 283..1193 30..959 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:23 Download gff for FMO05850.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12991-RD 388..1298 30..959 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:23 Download gff for FMO05850.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17596699..17596751 30..82 100 -> Plus
X 17596810..17597320 83..593 100 -> Plus
X 17597386..17597732 594..959 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:43 Download gff for FMO05850.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17490732..17490784 30..82 100 -> Plus
arm_X 17490843..17491353 83..593 100 -> Plus
arm_X 17491419..17491765 594..959 91   Plus