FMO05852.5prime Sequence
745 bp (745 high quality bases) assembled on 2008-09-02
> FMO05852.5prime
GTATAGCATACCTTATACGAAGTTATCAGTCGACATGAAAGTCACCCTGG
CAATAGCGACTTTCTGCGTGGTGATGGCCTGCAGCCATGCGGCCAGAACC
ACAACGACAACAGCGACCAAGCCGGGTCGCTTCCTCTCACTGCCCGTGCC
CGCCAAGTGCGCTAGCCGTCCCAAGGAGTTCTCCTACCGCGGCAAAAACA
TGTTCCTAACCACCCACGTGCCCGCGCTGGCCAACAAGAAGGTCGATTGG
TTGGATGGTCGCAATCTGTGCCGCGAGTACTGCATGGATCTGGTCGCCCT
GGAGACTCAGGAGAAGAACAATCTGATCTTCCGCGTGATCCAGCAGAACG
ATGTGCCGTACATCTGGACGGCCGGACGTATCTGTGACTTTGCTGGCTGC
GAGAATCGTCCAGATTTGGAGCCCAAGACCGTCTATGGATGGTTCTGGTC
CGCAACCCGCGAGAAGATCCAGGCCACCAACCGCATCCCACAGGGCTGGG
GCTACAACCCATGGTCGCAGACTGGCCACAAGAAGCGCCCGCAGCCGGAC
AACGCCGAATACGACATCAACCAGACCAAGGAGCAGTGCCTGTCCGTGTT
GAACAACGTGTACAACGATGGCATCGCCTGGCACGACGTGGCCTGCTACC
ACGAGAAGCCCGTCATCTGTGAGGACAACGAGGAGCTGCTGCGCTATGTG
GCGGCCACGAATCCCGGCATCCGTCTAGCAAGCTTTCTAGACCAT
FMO05852.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Clect27-RB | 1652 | CG3244-RB | 481..1173 | 35..727 | 3465 | 100 | Plus |
| Clect27-RA | 1279 | CG3244-RA | 108..800 | 35..727 | 3465 | 100 | Plus |
| CG6055-RB | 1034 | CG6055-RB | 603..662 | 587..646 | 180 | 86.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4797079..4797638 | 727..168 | 2800 | 100 | Minus |
| 2L | 23513712 | 2L | 4799744..4799878 | 169..35 | 675 | 100 | Minus |
| 2L | 23513712 | 2L | 7472062..7472121 | 587..646 | 180 | 86.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:42:28 has no hits.
FMO05852.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:05 Download gff for
FMO05852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clect27-RA | 101..806 | 28..733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:38:24 Download gff for
FMO05852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3244-RA | 101..806 | 28..733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:20 Download gff for
FMO05852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clect27-RA | 101..806 | 28..733 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:20 Download gff for
FMO05852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4797073..4797638 | 168..733 | 99 | <- | Minus |
| 2L | 4799746..4799883 | 30..167 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:05 Download gff for
FMO05852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4797073..4797638 | 168..733 | 99 | <- | Minus |
| arm_2L | 4799746..4799883 | 30..167 | 98 | | Minus |
