FMO05853.5prime Sequence
812 bp (812 high quality bases) assembled on 2008-09-02
> FMO05853.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGATGTACAAGTTA
TGGTGGAAATTGCTTCTCCTCCAGGCTTCTGGGTGTCTATCTCTGGAGAG
TCGCCCAGATCCACGCATAGTCGGTGGCTTCCCAGCCGATATCGCCAACA
TTCCGTACATAGTGTCCATCCAACTGTACGGCATCCACCATTGTGGCGGC
TCCATAATAAATAACCACACCATCCTAACGGCTGGCCATTGTCTGAACGG
AGTGCCACATCGCCTGCTAAAAGTTAAGGTCGGCGGAACGTCGCGCTACC
GAAAAGATGGGGAACTGTTCTCGGTCGCTGACCTGCAAGTCCACGAGAAT
TTCAATCCCAAGACCATGGACTATGACATCGGTATCATCAGGTTGACCAA
AAACCTAACACTATCTAGAAAGGTAAAGGCCATTCCCATAAACCCAGAGA
GAGTAGCCGAAGGCACCTATGCCACCATTGCCGGCTGGGGATTTAAGTCC
ATGAATGGTCCTCCCTCGGACAGTCTGAGATATGCCCGAGTGCCGATCGT
GAATCAGACCGCCTGCAGGAACCTACTGGGCAAAACTGTGACGGATCGGA
TGCTCTGTGCAGGCTACCTCAAGGGCGGCACGGATGCCTGCCAGATGGAC
TCCGGTGGACCCTTGTCGGTGAGGGAGCAGCTGGTGGGCATCGTGTCGTG
GGGAGTGGGGTGCGCCCTGGCGGACAAGCCGGGAGTCTACTCCCGCCTCG
ATGCACTGCATCCCTGGCTAGACCAGGTCTTGAATAAGTCAAAGGCAAGC
TTTCTAGACCAT
FMO05853.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7829-RA | 976 | CG7829-RA | 37..795 | 36..794 | 3780 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29817340..29817728 | 424..36 | 1930 | 99.7 | Minus |
| 3R | 32079331 | 3R | 29816919..29817292 | 794..421 | 1870 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:16:01 has no hits.
FMO05853.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:03 Download gff for
FMO05853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7829-RA | 27..798 | 24..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:38:26 Download gff for
FMO05853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7829-RA | 27..798 | 24..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:51 Download gff for
FMO05853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7829-RA | 27..798 | 24..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:51 Download gff for
FMO05853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29816916..29817290 | 423..798 | 99 | <- | Minus |
| 3R | 29817342..29817726 | 38..422 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:03 Download gff for
FMO05853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25642638..25643012 | 423..798 | 99 | <- | Minus |
| arm_3R | 25643064..25643448 | 38..422 | 99 | -> | Minus |
