FMO05854.5prime Sequence
554 bp (554 high quality bases) assembled on 2008-09-02
> FMO05854.5prime
ATAGCATACATTATACGAAGTTATCAGTCGACATGGTCCAACGTCTGACG
CTCCGGAGACGCCTGTCCTACAACACACGCTCCAACAAGCGGCGCATTGT
TCGCACGCCCGGTGGTCGTCTGGTTTACCAGTATGTGAAGAAGAACCCCA
CCGTGCCCCGTTGCGGCCAGTGCAAGGAGAAGTTGAAGGGTATCACCCCC
TCCCGCCCCAGCGAGCGCCCCCGCATGTCCAAGCGCCTGAAGACCGTGTC
CAGGACCTACGGTGGAGTGCTGTGCCACAGCTGCCTGCGCGAGCGTATCG
TGCGCGCCTTCCTCATCGAGGAGCAGAAGATCGTCAAGGCCCTGAAGAGC
CAGCGCGAGGCGCTCGTCAAGCCGGTGAAGGCCCCCAAGGCCAAGCCCGA
GCCCAAGAAGAAGCCCGCTGCTGGAGCCAAGGGAACCAAGGCCGGTGCCG
GCAAGGTCACCAAGGGTGGTGCTGGCGCCAAGGGAGCCGCTGGCAAGAAG
CCCGGCCAGAAGCCAGCCGCTGGCAAGCCCAGGAAGGCAAGCTTTCTAGA
CCAT
FMO05854.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL34b-RD | 622 | CG9354-RD | 48..551 | 33..536 | 2520 | 100 | Plus |
| RpL34b-RC | 589 | CG9354-RC | 15..518 | 33..536 | 2520 | 100 | Plus |
| RpL34b-RA | 771 | CG9354-RA | 197..700 | 33..536 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9400440..9400878 | 536..98 | 2195 | 100 | Minus |
| 3R | 32079331 | 3R | 26058635..26058917 | 380..98 | 830 | 86.2 | Minus |
| 3R | 32079331 | 3R | 9400942..9401006 | 97..33 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:06:04 has no hits.
FMO05854.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:03 Download gff for
FMO05854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL34b-RA | 190..703 | 25..540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:38:27 Download gff for
FMO05854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL34b-RA | 190..703 | 25..540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:59 Download gff for
FMO05854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL34b-RA | 190..703 | 25..540 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:59 Download gff for
FMO05854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9400436..9400878 | 98..540 | 99 | <- | Minus |
| 3R | 9400942..9401013 | 25..97 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:03 Download gff for
FMO05854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5226158..5226600 | 98..540 | 99 | <- | Minus |
| arm_3R | 5226664..5226735 | 25..97 | 95 | | Minus |
