FMO05855.5prime Sequence
376 bp (376 high quality bases) assembled on 2008-09-02
> FMO05855.5prime
CATACATTATACGAAGTTATCAGTCGACATGGCCACCTACGAGGAAGTCA
AGGACATTCCAAACCACCCGGAGAAGTACCTGTTCGATGTGCGCAACGAG
TCGGAGCTGAAGGAGACGGGCGTCCTGCCCGCCAGCATAAACATTCCACT
GAGCGAGCTGGAGAAGGCACTGAACTTGCCGGAGGAGGACTTCGCCCAGA
CTTATGGACGCGTCAAGCCGGCCGTCGATGCGGTCTTGATCTTCTCGTGC
AAGGCGGGAGGACGCGCTGCCCGGGCGGCCAATCTGGCCAGCACGCTGGG
CTTCACCAACGCCAAGGCTTATGCCGGATCATGGACGGAGTGGCAGGCCA
AGCAGTCCGCAAGCTTTCTAGACCAT
FMO05855.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12279-RA | 601 | CG12279-RA | 68..397 | 29..358 | 1650 | 100 | Plus |
| mus308-RA | 6420 | CG6019-RA | 6329..6377 | 358..310 | 245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12705338..12705503 | 144..309 | 815 | 99.4 | Plus |
| 3R | 32079331 | 3R | 12705161..12705281 | 29..149 | 605 | 100 | Plus |
| 3R | 32079331 | 3R | 12705566..12705614 | 310..358 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:24:38 has no hits.
FMO05855.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:13 Download gff for
FMO05855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12279-RA | 68..407 | 29..368 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:38:29 Download gff for
FMO05855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12279-RA | 68..407 | 29..368 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:01 Download gff for
FMO05855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12279-RA | 68..407 | 29..368 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:01 Download gff for
FMO05855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12705163..12705281 | 31..149 | 100 | -> | Plus |
| 3R | 12705344..12705503 | 150..309 | 100 | -> | Plus |
| 3R | 12705566..12705624 | 310..368 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:13 Download gff for
FMO05855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8530885..8531003 | 31..149 | 100 | -> | Plus |
| arm_3R | 8531066..8531225 | 150..309 | 100 | -> | Plus |
| arm_3R | 8531288..8531346 | 310..368 | 93 | | Plus |
