FMO05856.5prime Sequence
1253 bp (1080 high quality bases) assembled on 2008-09-02
> FMO05856.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGACTTTGCCCGA
TCTTGTAGCTGGACTTTCGTCAAATCCCTACTTTGGTGCCGGTTTTGGAC
TATTTGGTGTGGGCGCCGCTGCTGCCATATTGCGCAAGGGCCTCCAGGGC
GGAGTGATACTGTTCCGGCGGCACTGCATGATTACCCTGGAGGTGCCGTG
TCGGGACAAATCCTATCAGTGGCTGTTAAAATGGATTACGATCAGAGGAG
CGCGAAAAACGCAACACTTGAGCGTGGAGACAAACTTTGTGCAGAACGAC
AATGGCACAATCAAAACCAGCTATGACTTCATACCCAGCATAGGCAAGCA
TCTGTTCCAGTACAAGGGCAATTGGATTCAGGTGGAGCGGACCAGGGAAC
AACAGACATTGGACCTTCACATGGGTGTTCCTTGGGAGACAGTGACGCTT
ACAGCGTTTGGTAACAATAAAGGTATATATTTCGATATCCTCGAAGAGGC
TAGGCAGCTGGCTCTGGAGGCCACAGAGGGCAAAACCGTGCTGTACACAG
CGATGGGTGCGGAATGGAGACCCTTCGGACATCCGCGCAGAAGGCGTCCC
ACTGGATCGGTGGTGCTGGATCGCGGAACTTCGCAACGAATCATTGCCGA
CTGCCAGGACTTCATTAAGAGCTCTCTGTGGTATACGCAACGTGGAATCC
CCTACCGAAGAGGCTACCTTCTGTACGGGCCACCTGGTTGTGGCAAGTCT
AGCTTTATAACCGCCCTGGCGGGCGAACTGGAGTACAGTGTCTGCCTGCT
AAACCTATCCGAAAGAGGCCTCACCGATGATCGACTCAATCATCTCCTGA
ATGTTGCGCCAGAGCAGAGTATCATTCTGCTGGAGGACATCGACGCAGCA
TTCGTCTCGCGCGAAGCTACTCCGCAGCAGAAATCCGCCTTTGACGGTCT
CAACAGGATAACGTTCAGTGGACTCCTAAATTGCTTGGACGGTGTGGGCT
CCACGGAGCCAGATTGTCTCATGACACAACTAACATTGACCGCCTCGATC
CCGCCTTAGTTCGTCCTGTTAGAATCGATTTAGATACTGGCTATTGTACG
GCAATATCAGTGGGAGGAGAGGTCCAGAACTTCTTCGCCAGCAGTGACAC
CAAAGCGAGGATCCGAAACCGAGTGATTTCTTGAACCTCGAGTCCGGCCC
ATCCAGCCTTTCATGGAACCAAACTGTCTCTCGGCGCAAACGGTATAGTG
AGA
FMO05856.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4908-RA | 1353 | CG4908-RA | 52..1211 | 37..1180 | 5250 | 97.6 | Plus |
| CG4908-RB | 1710 | CG4908-RB | 409..1568 | 37..1180 | 5250 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10223146..10224271 | 37..1152 | 5045 | 98 | Plus |
Blast to na_te.dros performed 2014-11-28 19:31:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X-element | 4740 | X-element ROXELEMENT 4740bp | 2202..2293 | 552..647 | 129 | 61.5 | Plus |
FMO05856.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:14 Download gff for
FMO05856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4908-RB | 401..1547 | 29..1161 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:38:30 Download gff for
FMO05856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4908-RA | 51..1189 | 37..1161 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:25 Download gff for
FMO05856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4908-RB | 401..1547 | 29..1161 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:25 Download gff for
FMO05856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10223133..10224271 | 25..1152 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:14 Download gff for
FMO05856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10223133..10224271 | 25..1152 | 97 | == | Plus |
