FMO05857.5prime Sequence
1262 bp (1077 high quality bases) assembled on 2008-09-02
> FMO05857.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGTCATGGACGAGTGG
CCTGTACAAGTCCTTGCTCCTTCGGAGCCAGCAATCGCTTGTGCGTCCGG
ATCTCGCCCTCCTGGACATCCAGATATCGAAGCGGGCCATTGAAACGATG
TTCGGTCATCGAAGGGAATTGAGTTTCAATCATTCACATACCGCCGACAT
CATTGCCAAGAAGTGCGAAGAGCTTTTCAATGCCAACGAATTTGAGAACG
CCCTAACCACGCTTTATACGGACGGACGTCCCTTTGGCGGACAATTTGCC
CACGGGCGGTTCGAGATGATCAAGCAAAGGAGCCTCGCTGTCTTCGAAGA
CACCTTGGGCGAATCCCTGCGTCCCTTTATGCATCAGCACAGGGACGTCC
TGGAGCAAATCAACCGACGCCAGAAGGAGCTGGCCGCCCATGTGTCCCGC
CCACTTTGGAAGAAGCTGCGCGACCAACAGCAGTGCGACGTCCAGAGTAT
CATTATCAAGGAGCGGCCGCAGTTGACCTTACTAGAAAAGGCCCGCCGGC
GGGCGAGTGAGAGTCTGTACAACCACAACTACTTGGGCCGCAGCGCCGTC
GATATCGCGCTGCTGCGTCAACTGCGCAGCGACCGCAACTTCCTCGATCC
CCTGAGGCTTGCCACCACGCCCCCAATGCGCAAGCTGACCAGAAGGCAGT
TCACGATTGTGCGGCGGCTTATGAAAATGCTTCAAGCCCGAAATCCGTTG
TACAACCGGCGGTACGTGCAACAACGGCACGGTCCGATTGCAGACCAGGA
GCGGCGTCGGTGGCAGGAGATGCACCTGTTCCATGCGCAGTACCAGACGC
GACGCGACTGCATGCGGATGCTGCACGAGGTGCACAAGCGGCGCCGGGAG
GGCGATGTGGAGAGCTGTCCGATTACGTGGAGACATAATGTCGGGATTCA
TAGAGTATAAAACCCATCGCCACGCTGCCCTGGAAGTTTGAGTTCATCAA
CGAAGTCTACATATCCTGGCACTGGCCTATTGCCGACAGTGCGCCGGTGC
CAGCCAATGTTCGACTTCCTGCAGGCCCAGATCGACCCATCTTATACCTA
CTGCGGACGGAGAAGCTGCACGACTGAGCGTACGATCGGGGGTCCCAACA
TCTATGGTGGAAATCGAAAGGAGGATGGACGGCCAGCCGGATAGCCGAGC
TAAGAACTGAATCGGGGTGGATCACTCCGCCGTTGGCAATCTGAGCGCAT
CATCTATGTGGT
FMO05857.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p-cup-RA | 1875 | CG12993-RA | 72..1233 | 32..1189 | 5335 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17447927..17448320 | 723..330 | 1925 | 99.2 | Minus |
| X | 23542271 | X | 17447190..17447626 | 1156..723 | 1660 | 96.6 | Minus |
| X | 23542271 | X | 17448405..17448703 | 330..32 | 1465 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:43:01 has no hits.
FMO05857.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:18 Download gff for
FMO05857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p-cup-RA | 69..1236 | 29..1192 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:38:32 Download gff for
FMO05857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12993-RA | 69..1236 | 29..1192 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:07 Download gff for
FMO05857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p-cup-RA | 69..1236 | 29..1192 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:07 Download gff for
FMO05857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17447153..17447625 | 724..1192 | 95 | <- | Minus |
| X | 17447927..17448319 | 331..723 | 99 | <- | Minus |
| X | 17448405..17448706 | 29..330 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:18 Download gff for
FMO05857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17341186..17341658 | 724..1192 | 95 | <- | Minus |
| arm_X | 17341960..17342352 | 331..723 | 99 | <- | Minus |
| arm_X | 17342438..17342739 | 29..330 | 99 | | Minus |
