FMO05873.5prime Sequence
1231 bp (1074 high quality bases) assembled on 2008-09-02
> FMO05873.5prime
AGCATACCTTATACGAAGTTATCAGTCGACATGCATTGGATTAAATGTTT
ATTAACAGCATTCATTTGCTTCACAGTCATCGTGCAGGTTCACAGTTCCG
GCAGCTTTGAGTTGCGCCTGAAGTACTTCAGCAACGATCACGGGCGGGAC
AACGAGGGTCGCTGCTGCAGCGGGGAGTCGGACGGAGCGACGGGCAAGTG
CCTGGGCAGCTGCAAGACGCGGTTTCGCGTCTGCCTAAAGCACTACCAGG
CCACCATCGACACCACCTCCCAGTGCACCTACGGGGACGTGATCACGCCC
ATTCTCGGCGAGAACTCGGTCAATCTGACCGACGCCCAGCGCTTCCAGAA
CAAGGGCTTCACGAATCCCATCCAGTTCCCCTTCTCGTTCTCATGGCCGG
GTACCTTCTCGCTGATCGTCGAGGCCTGGCATGATACGAACAACAGCGGC
AATGCGCGCACCAACAAGCTCCTCATCCAGCGACTCTTGGTGCAGCAGGT
ACTGGAAGTGTCCTCCGAATGGAAGACGAACAAGTCGGAATCGCAGTACA
CGTCGCTGGAGTACGATTTCCGTGTCACCTGCGATCTCAACTACTACGGA
TCCGGCTGTGCCAAGTTCTGCCGGCCCCGCGACGATTCATTTGGACACTC
GACTTGCTCGGAGACGGGCGAAATTATCTGTTTGACCGGATGGCAGGGCG
ATTACTGTCACATACCCAAATGCGCCAAAGGCTGTGAACATGGACATTGC
GACAAGCCCAATCAATGCGTTTGCCAACTGGGCTGGAAGGGAGCCTTGTG
CAACGAGTGCGTTCTGGAACCGAACTGCATCCATGGCACCTGCAACAAAC
CCTGGACTTGCATCTGCAACGAGGGTTGGGGAGGCTTGTACTGCAACAGG
ATCTGAACTACTGCACCAACCACAGACCCTGCAAGAATGGCGGAACCTGC
TTCACACCGGCGAGGGATTGTACACATGCAAATGCGCTCCAGGATACAGG
TGGTGATGATTGCGAAATGAATCTACTCCTGCGATGCCGATGTCATCCTG
CAGATTGGTGGTACTGCATCGATGAGCGCCACCAAACGCTACAAGTTCAT
GCGCCACGCTGGAGGGAAGAGTTGCAGGGAGAAGTGCTAGTGTTCCGACT
ATCTGTCACAGATCTGCCTACGTCCTGTGGAACAGGTCAGCTACATGCAA
GTTCCATGGCTTACGCGAACCACCTGGCCTA
FMO05873.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dl-RC | 4581 | CG3619-RC | 678..1733 | 29..1077 | 5045 | 99.1 | Plus |
| Dl-RB | 3546 | CG3619-RB | 678..1733 | 29..1077 | 5045 | 99.1 | Plus |
| Dl-RA | 5278 | CG3619-RA | 678..1733 | 29..1077 | 5045 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19319817..19320134 | 400..83 | 1590 | 100 | Minus |
| 3R | 32079331 | 3R | 19311816..19312064 | 715..467 | 1245 | 100 | Minus |
| 3R | 32079331 | 3R | 19306312..19306589 | 1045..771 | 1145 | 98.2 | Minus |
| 3R | 32079331 | 3R | 19316006..19316073 | 466..399 | 340 | 100 | Minus |
| 3R | 32079331 | 3R | 19325480..19325540 | 89..29 | 305 | 100 | Minus |
| 3R | 32079331 | 3R | 19308707..19308761 | 770..716 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:11:05 has no hits.
FMO05873.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:26 Download gff for
FMO05873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dl-RA | 670..1743 | 21..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:58 Download gff for
FMO05873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dl-RB | 666..1739 | 21..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:46 Download gff for
FMO05873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dl-RA | 670..1743 | 21..1086 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:46 Download gff for
FMO05873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19306265..19306589 | 771..1086 | 96 | <- | Minus |
| 3R | 19308707..19308761 | 716..770 | 100 | <- | Minus |
| 3R | 19311816..19312064 | 467..715 | 100 | <- | Minus |
| 3R | 19316006..19316072 | 400..466 | 100 | <- | Minus |
| 3R | 19319818..19320129 | 88..399 | 100 | <- | Minus |
| 3R | 19325482..19325548 | 21..87 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:26 Download gff for
FMO05873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15145540..15145851 | 88..399 | 100 | <- | Minus |
| arm_3R | 15151204..15151270 | 21..87 | 95 | | Minus |
| arm_3R | 15131987..15132311 | 771..1086 | 96 | <- | Minus |
| arm_3R | 15134429..15134483 | 716..770 | 100 | <- | Minus |
| arm_3R | 15137538..15137786 | 467..715 | 100 | <- | Minus |
| arm_3R | 15141728..15141794 | 400..466 | 100 | <- | Minus |
