FMO05874.5prime Sequence
1283 bp (1079 high quality bases) assembled on 2008-09-02
> FMO05874.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGGGTGGCAATAGCAC
AGGAGCGAATACGAGCGCCTTCAGCGCTGGCGGTTACATTGGGCCCACGT
CGGCCAGCAGTCATCACAGCCTGGGAACTTCATCGGCGGCAGCGGCAGCA
GCAGCAGGAAGTGACCTGATACCCGCACCAATTGGCACGGGCAACGCCAT
GGGAGTGTCTTCGTATGCATACGGTGGAACCAGTTGGGAGGAGTTCTGCG
AACGACACGCCAGAGTGGCTGCCTCGGATTTCGCCAAGGCGTGCATCACG
TACATTAATGGCAATCTGCCGCCGGAGGAGGCGAGGAACATCCAGCATCG
CAGCTTTGCTCAGAAATTTGTGGAATCCTTTTCGGCGCACTACGACACGG
AGTTCTTCAAGCGGAGGAGCACTCTTAAATCAGGTGCGGGCTCGCTGGAC
TTCGAGGAGGAGCACGAGGTGCCAAAACTGCTCTCAAAGTCTCTATTAAG
ACGACTATCATTCAAAGGACTGCGCAAGGGCAAGGCCTTCTTCCACAAGA
ACTCGGATGACTTGGATGGCAGCGGTGGCAGCGGCAAGCAGAGCAAGACG
AAGCTGGCCAAGATCGTTGTGGAGTGCCGGAAGGAGGGCACAGTGAACAA
CCTGACGCCGGAAAGTCTGGATCAACCGACGGGCTCCCAAAAGTGGGAGA
AGTGTCGACTTGTACTGGTCAAGGCCGTGGGTGGCTACATGCTAGAGTTT
TACACGCCGCACAAGGCGACTAAGCCGCGCAGTGGAGTCTTTTGTTTCCT
CATCTCGGAGGCTCGCGAAACAACGGCACTTGAGATGCCGGACAGGCTGA
ACACATTCGTCCTCAAGGCAGACACAACATGGAGTATGTGATTGAGGCGG
AGAGCGCGGAGGAGATGCGGAGTTGGCTAGCCACATACGGTACTGCATGC
GAACGCCACCCACTCAGCAGCCAACGATCGAGTCGGATGGTGTTATGGCG
TCCGCATGCAAACATCGCCGACCTTCCGAGTCCCAATCCCAATGGTTGGG
ATTCGAATCCGCAGAACAGCAGCAGCGCGGCTCGAATGCCATCTGGGGGG
AGGGGGAGCTCCGCCTCACCTCATCGCTGTCTGACGACAGTGCCTTGGCA
GGAGAGACCATCTCGCCAGAAACTAAATGTCACTAACGAAATTGGACACT
TACCACCTCGGGCACTGACTATACTGTATGACCATACTCTAGAGAGGTAA
GAAGCCCGTACTCGCGCTCTCAGACACTACTCC
FMO05874.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lnk-RF | 2951 | CG17367-RF | 279..1453 | 34..1199 | 5270 | 97.4 | Plus |
| Lnk-RA | 3113 | CG17367-RA | 474..1648 | 34..1199 | 5270 | 97.4 | Plus |
| Lnk-RB | 2918 | CG17367-RB | 279..1453 | 34..1199 | 5270 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25890716..25891336 | 533..1148 | 2565 | 96.8 | Plus |
| 3R | 32079331 | 3R | 25889778..25890279 | 34..535 | 2510 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:00:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9161..9232 | 95..163 | 118 | 66.7 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 131..202 | 95..163 | 118 | 66.7 | Plus |
FMO05874.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:06 Download gff for
FMO05874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lnk-RB | 279..1453 | 34..1199 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:38:39 Download gff for
FMO05874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lnk-RA | 399..1573 | 34..1199 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:51 Download gff for
FMO05874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lnk-RB | 279..1453 | 34..1199 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:51 Download gff for
FMO05874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25889770..25890278 | 26..534 | 99 | -> | Plus |
| 3R | 25890718..25891391 | 535..1199 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:06 Download gff for
FMO05874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21715492..21716000 | 26..534 | 99 | -> | Plus |
| arm_3R | 21716440..21717113 | 535..1199 | 95 | | Plus |
