FMO05875.5prime Sequence
1242 bp (1050 high quality bases) assembled on 2008-09-02
> FMO05875.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTGAAGAACA
AGTCCATGAAAACCTCAAAGTTATATGTTATTAAGAGAGATGGCAGGCAG
GAGGAGGTGCACTTCGATAAAATAACCTCAAGAATCCAGAAGCTTTGCTA
CAACTTGAACATGGATTTTGTTGATCCTGTTACTATCACCCTGCAAGTCA
TCAATGGTCTGTACTGCGGCGTGACCACCCAGGAGCTGGACAACTTGGCA
GCAGAAATCGCAGCTGGATTAACATGCAATCATCCCGACTACGCCATCCT
GGCTGCTCGCATTGCAGTGTCCAATTTGCACAAGGAAACCAAGAAGGCTT
TTTCTGACGTCTTCGAGGATCTGTATAATCATGTAAACAAGGAGACGAAT
CAAAAAGTGCCCTTGGTATCCGAGTTTCACTACAATGTGGTTAAGAAGAA
CGCCACACGGCTGAACTCGTCCATAATCTATGATCGTGACTTTGGCTATA
ACTATTTTGGCTTCAAGACCCTGGAGCGTTCCTATCTGCTCAAAAGAAAC
GGAAAGATCGCAGAGCGACCGCAGCATATGCTGATGCGCGTGGCGATCGG
AATCCATGGAGAGGATATCGATGCGGCCGTGGAAACTTATAATCTTCTAT
CGGAGCGCTACTTCACGCATGCATCGCCCACACTGTTTGCCGCTGCCACA
AACCGGCCGCAGTTGTCGTCGTGTTTCCTTCTGACCATGACAGCCGACTC
CATCGAGGGCATTTTCAAGTCTGTGGAGCAGTGCGCCATGATCTCCAAGT
CCGCCGGTGGCATTGGACTTAACGTACACTGCATTCGTGCAAAGGGCACA
TCGATTTGCGGCACAAATGGAACTTCGAATGGGTTGGTTCCATGCTGAGG
GTTTCAATAATGTGGCACGTTATGTGGATCAGGAGGCGGCAGCGTCCCGG
TGCCTTTGCCATTTACCTGACCCTGGCACTCGGATGTCTTTGAGTCCTGA
CTGAGAGAACACAGGCAAGAAGAGATCCCCCCCCGCGATCTGTTTACGCC
TGTGGATACCCGATCTCTCATGAACGCGTGGAGGCAACGTGATGTCGCTC
ATGTGCCCCACATGTCCTGTCTCCCGACGGTGGGGGCATGATTCGAAAGC
TACGAAATCAGACAAAGGTCGGCACCCGACGTAGCTAATCTGGGTTGCCA
TTGAGCAGTGAACGATTCGTAGTCGGTCTAGAGCCTGTGTAC
FMO05875.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RnrL-RA | 2577 | CG5371-RA | 58..1203 | 30..1148 | 4960 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10326574..10327219 | 995..356 | 2965 | 99.1 | Minus |
| 2L | 23513712 | 2L | 10327277..10327454 | 356..179 | 890 | 100 | Minus |
| 2L | 23513712 | 2L | 10327685..10327777 | 180..88 | 465 | 100 | Minus |
| 2L | 23513712 | 2L | 10327823..10327886 | 93..30 | 275 | 95.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:00:48 has no hits.
FMO05875.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:13 Download gff for
FMO05875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrL-RA | 49..1182 | 22..1129 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:38:40 Download gff for
FMO05875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrL-RA | 92..1225 | 22..1129 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:57 Download gff for
FMO05875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrL-RA | 49..1182 | 22..1129 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:57 Download gff for
FMO05875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10326421..10327218 | 357..1129 | 96 | <- | Minus |
| 2L | 10327277..10327454 | 179..356 | 100 | <- | Minus |
| 2L | 10327687..10327775 | 90..178 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:13 Download gff for
FMO05875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10326421..10327218 | 357..1129 | 96 | <- | Minus |
| arm_2L | 10327277..10327454 | 179..356 | 100 | <- | Minus |
| arm_2L | 10327687..10327775 | 90..178 | 100 | <- | Minus |
