FMO05876.5prime Sequence
1245 bp (944 high quality bases) assembled on 2008-09-02
> FMO05876.5prime
AGCATACCTTATACGAAGTTATCAGTCGACATGTCGCATCACTACGTGGT
GACGGCGCAAAAGCCGACGGCCGTTGTTGCCTGCCTAACAGGCAACTTCA
CCTCGCCCACGGATCTCAATTTGATCATTGCCCGGAACAATCAGGTGGAA
ATCGATCTGGTCACGCCGGAGGGACTGCGCCCCCTAAAAGAGATCAACAT
AAATGGCACCATTGCCGTGATGCGCCACTTCCGACCGCCCGACAGCAACA
AGGATTTGCTCTTCATACTGACGCGTCGTTACAACGTCATGATCCTCGAG
GCCCGTATGGTCAACGACGTCATCACGGTGGTGACCAAGGCCAATGGTAA
TGTTTCCGACTCGGTGGGCATCCCCTCCGAAGGAGGAGTTATTGCGGCCA
TCGATCCCAAGGCTAGGGTCATCGGAATGTGCCTTTACCAGGGGCTGTTC
ACCATCATTCCGATGGACAAGGATGCTAGCGAGCTGAAAGCCACAAATCT
TAGAATGGATGAGCTAAACGTGTACGATGTTGAGTTTCTGCACGGCTGCT
TGAATCCCACAGTTATCGTGATCCACAAGGACAGCGATGGCCGGCACGTA
AAGTCGCACGAGATTAATCTGCGGGATAAGGAGTTTATGAAAATCGCATG
GAAGCAGGACAACGTGGAAACAGAGGCCACAATGCTGATCCCGGTGCCGT
CGCCCATCGGTGGTGTTATCGTCATTGGTCGGGAAATCGATTGTATACCA
TGACGGAGCAACTATCACGCTGTGGCGCCGCTCACTTTTCGCCAAAGCAC
CATCACTGTTACGCCCGTGTGAGTAGCAATGGATTGCGCTATCTGCTGGG
TAACATGGGATGGTCAGCTGTATATGCTTGTTCCTTGGGACCGCTGAAAT
CAAGCAAGGGAGTGACTGTGAAGAAATAAAAGTTGAGCAACTAAGCGAGA
CTCCTATAACAGAGTGCATTACATACCCTAGACAAGGTTTCCTTTACATT
GGAGCACGTCATGGAAACTCCAGTGGTGCCCTGAATTCGAGCCATCGACC
GTCATATGTCCTGCCTGAAGAGAATTCACCATCTAGCTCCCAATTCTGGA
CATGGCTGTGTCGATCTGATCGCCAGGACGGCTAATCATCCAATGCCGGA
GCTTAAGGATGGATTCTTAGCAATCATAGGCATCGCAATCCAGCCTGCGT
CTAGATTCCCCGGACTAGGAGCATGTGGTCCTTAGTGGCGTAAAC
FMO05876.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pic-RA | 3881 | CG7769-RA | 164..1269 | 30..1127 | 4835 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13052620..13053034 | 89..503 | 2075 | 100 | Plus |
| 3R | 32079331 | 3R | 13053235..13053752 | 502..1020 | 2015 | 96.4 | Plus |
| 3R | 32079331 | 3R | 13052408..13052470 | 30..92 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:06:11 has no hits.
FMO05876.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:04 Download gff for
FMO05876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pic-RA | 160..1327 | 23..1177 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:38:43 Download gff for
FMO05876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DDB1-RA | 149..1316 | 23..1177 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:03 Download gff for
FMO05876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pic-RA | 160..1327 | 23..1177 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:03 Download gff for
FMO05876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13052404..13052469 | 23..91 | 95 | -> | Plus |
| 3R | 13052623..13053034 | 92..503 | 100 | -> | Plus |
| 3R | 13053237..13053926 | 504..1177 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:04 Download gff for
FMO05876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8878126..8878191 | 23..91 | 95 | -> | Plus |
| arm_3R | 8878345..8878756 | 92..503 | 100 | -> | Plus |
| arm_3R | 8878959..8879648 | 504..1177 | 92 | | Plus |
