FMO05877.5prime Sequence
1160 bp (850 high quality bases) assembled on 2008-09-02
> FMO05877.5prime
ATACGAAGTTATCAGTCGACATGGCAGATTCCAAGGGTGAAGATCTGGCT
ACGGCGATCCTGAAGCGCAAGGACCGTCCCAACCGACTGATTGTGGAAGA
GGCGCAGAATGACGACAACTCTGTGGTGTCGCTATCGCAGGCGAAGATGG
ATGAGCTGCAGCTCTTCCGTGGCGACACCGTGATTCTGAAGGGTAAGCGC
CGAAAGGAGACGGTGTGCATCGTGCTCTCGGACGACACCTGTCCCGACGA
GAAGATCCGCATGAACCGCGTGGTGCGCAACAACCTGTGCGTCCATCTTT
CAGATGTGGTTTCCGTGCAGTCCTGCCCGGACGTCAAGTACGGCAAACGG
GTGCGCATCCTGCCCATCGACGAAAGCACCGAAGGCGTTACCGGCAACCT
GTTCGAGATCTATCTGAAGCCGTACTTCCTAGAGGCCTATCGGCCAATCC
ACATGGGCGACAACTTTATTGTGCGCGCCGCCATGCGTCCTATTGAGTTC
AAGGTGGTGCTGACCGACCCGGAGCCCTACTGCATCGTAGCTCCCGAGAC
TGTAATCTTTCTGCGACGGTGATCCAATCAAGCGCGAGGAGGAGGAGGAG
TCCCTAAACGCCGTTGGCTACGATGATATCGGTGGTTGCCGCAAGCAGCT
GGCCCAGATCAAGGAGATGGTTGAGTTGCCTTTGCGGCATCCATCGCTCT
TCAAGGCCATTGGTGTGAAGCCACCGCGTGGTATTCTTATGTACGGTCCC
CGGGTTACCGGTAAGACCCTGAATGCCAGGCTGTGCCAACGAGACCGGAG
CCTTTTTTCTTCCTGATTAACGGACCGGAGATCATGTCCAAACTGGCCGG
AGAGTCGAATCGATTCTGCGTAGGCTTTCAAGAAGCCGAAAAAACTTCGC
CGGCTATCATCTTCTCGATGAGTCGACCTATTGCCCCCAAGCGTGAAAGG
ACCACGGTGAGTGGAACGTCCCATTGGTCGAACTTTTGAACTTGATGATG
CATGAAAAAAGCTCCATCTGATTGTATGCTGCTACCAACAGCCAATTCAT
TGACCGGCCTGCTCCTTTGGAGTTTGATCGGGAATTGCAACTGCATCTAT
GCCCTGTCGCTGGAGGTGCTGGCCATTACACAAAACTTGAACTGTGGAAT
GATGGTGAAC
FMO05877.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TER94-RA | 3016 | CG2331-RA | 128..1213 | 20..1080 | 4380 | 95.3 | Plus |
| TER94-RE | 3055 | CG2331-RE | 183..1255 | 33..1080 | 4300 | 95.2 | Plus |
| TER94-RC | 3058 | CG2331-RC | 183..1255 | 33..1080 | 4300 | 95.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9990657..9991478 | 138..953 | 3400 | 96.7 | Plus |
| 2R | 25286936 | 2R | 9990470..9990574 | 37..141 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:24:44 has no hits.
FMO05877.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:18 Download gff for
FMO05877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RA | 121..1086 | 14..970 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:38:44 Download gff for
FMO05877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RA | 119..1084 | 14..970 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:05 Download gff for
FMO05877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TER94-RA | 121..1086 | 14..970 | 96 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:05 Download gff for
FMO05877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9990471..9990573 | 38..140 | 100 | -> | Plus |
| 2R | 9990660..9991497 | 141..970 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:18 Download gff for
FMO05877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5877976..5878078 | 38..140 | 100 | -> | Plus |
| arm_2R | 5878165..5879002 | 141..970 | 96 | == | Plus |
