FMO05879.5prime Sequence
446 bp (446 high quality bases) assembled on 2008-09-02
> FMO05879.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAACCGTCAGCC
TGCGAAGATCTCAAGGCCTTCGAGCGGCGCCTCACCGAAGTGGTTTCATC
GTACCGTCCCTCGACGTTCCGCTGGCGCAAGCTTCTTGCAGTTGTCCTTT
CCGCCATGTCCATGTGCACCGCCATCAGCGCCTGGTACTGGCTACGCGAT
CCGCGCACCACCGTTGTACCGCTAACGGAGTCCCTCTGGATTCATCCCGT
CTTCACAGTCGCCACCCTAACATTGGTCGTCCTGTTCATCCTGGGCATAC
AGAAACTAGTCATAGCTCCGCAAATAATTACATCGAGAACGCGAATGGTA
CTGGGAGACTTTAATATGAGCTGTGACGACACGGGGAAGCTGATACTCAA
GCCGCGGCAAAGTAACAACAACAGTACAGTAAGCTTTCTAGACCAT
FMO05879.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8009-RB | 863 | CG8009-RB | 159..551 | 36..428 | 1965 | 100 | Plus |
| CG8009-RA | 804 | CG8009-RA | 159..539 | 36..428 | 1775 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10639214..10639366 | 276..428 | 765 | 100 | Plus |
| 3L | 28110227 | 3L | 10638554..10638700 | 130..276 | 735 | 100 | Plus |
| 3L | 28110227 | 3L | 10638421..10638494 | 56..129 | 370 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:15:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 939..977 | 119..82 | 111 | 79.5 | Minus |
FMO05879.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:01:13 Download gff for
FMO05879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8009-RB | 159..556 | 36..434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:38:47 Download gff for
FMO05879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8009-RB | 152..549 | 36..434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:51 Download gff for
FMO05879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8009-RB | 159..556 | 36..434 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:51 Download gff for
FMO05879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10638304..10638325 | 36..57 | 100 | -> | Plus |
| 3L | 10638423..10638494 | 58..129 | 100 | -> | Plus |
| 3L | 10638554..10638700 | 130..276 | 100 | -> | Plus |
| 3L | 10639215..10639371 | 277..434 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:01:13 Download gff for
FMO05879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10631404..10631425 | 36..57 | 100 | -> | Plus |
| arm_3L | 10631523..10631594 | 58..129 | 100 | -> | Plus |
| arm_3L | 10631654..10631800 | 130..276 | 100 | -> | Plus |
| arm_3L | 10632315..10632471 | 277..434 | 98 | | Plus |
