FMO05880.5prime Sequence
1236 bp (1033 high quality bases) assembled on 2008-09-02
> FMO05880.5prime
GTTATCAGTCGACATGTTTACGCCCAGGCAGAAAGGATACGGGAATGGCT
TCATTCACTCGCCACAAACACCTCTCAGCTTCAGCCGGGAACTGCGGCAG
GTGCTGCAGGAGCGGAATCTTCTAACTGCCAAGTCGCGTAGGAAAGTTTG
CTCCATGCTGGACAGCAACAACAGCAGTCCGATTGGCTCCCCCAATCCGG
ACGCGGGAAAAAGATTGGGTTTCCGTCGCCAGGCCATCCAGGAGATTATT
TCGTCGGAGAAATCGTATCTGGAGCAGCTGGAGCTGCTGATGAACTTTTT
TGTGCGTCCCTTGAAGGAACAGGCTATCATCGATTGCTCCAATCACACGC
TGCTCTTCGGTCAAATCGAGATGATTCACAATCTTAACGGAGAATTCCTG
CGCGAACTGGAGGCGAACATGGAGAATGTTGCGCACGCATTCCTGAAAAT
GGCTCCTTTCTTCAAACTGTACTCGGTGTACGCCTTTGACTACCGCGGAG
CTCTGTTCATCATCCAGGATTTGATCAGCAAGAATCCGGTGTTCCGAAAG
TTTCTGGAGCAGACCGAGAGTCGTCCGGAGGTGCAACGCAAGCTAAATTC
GCTGATGATTGTGCCCATCCAGCGGGTACCGCGGTATAAGCTTCTTCTGG
AGCAGGTACTGCTCTACACGAGTCCCGCAGATGCTGACTATAAGTTGTTG
AAAGAATCCGTCAAGGAGATCGAGGCCACCGCCAGTCACATAAACACCTG
TGTGGAGGAGCAGGAAATTACCCAGTATCTGATTCATTTGCAGACTCTTT
GGTGAATCGCACACCGAACATTGTGAAGCCCTCGCGACGGGTAATCAAGG
AGGGTGTACTGCAGAAGATCACTCACAGGCACGGAAATCAAGCGCTACTG
TGTTCTCATGTCCGACATCTTCATGTACTGCAAGATGATCAGGACGTGCG
CCACACCGTTGTGGAACTCACTGGAGTGTGCTGTATTTTTCGTTGAAAAT
GCAAGTGTACGAATGCTGCCGGCCACTTTAGCTTACTTGCCAAGTGATGG
ATATCATCGTAGCGCCATGTGCACCTGTCCGCACTTGGTGGCTCTCCCGC
ATGCCATCGATCTGCCGTCATGCCAGACCCTGCCGAAGATTGGCAAGATG
CCTATCCGAAGACTGATTCGACGTTATATGCTGATCTATGCCATGCCAAT
GTATCCGTTTCCCCTATGAATCCGCACGCGAGATTC
FMO05880.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF4-RA | 2132 | CG8606-RA | 102..1230 | 14..1115 | 4920 | 97.1 | Plus |
| RhoGEF4-RB | 1933 | CG8606-RB | 34..1031 | 145..1115 | 4265 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7322555..7323114 | 704..145 | 2800 | 100 | Minus |
| 3L | 28110227 | 3L | 7322201..7322499 | 991..703 | 1120 | 96.3 | Minus |
| 3L | 28110227 | 3L | 7323178..7323310 | 146..14 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:16:05 has no hits.
FMO05880.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:05 Download gff for
FMO05880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF4-RA | 102..1244 | 14..1127 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:38:48 Download gff for
FMO05880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF4-RA | 100..1242 | 14..1127 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:55 Download gff for
FMO05880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF4-RA | 102..1244 | 14..1127 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:55 Download gff for
FMO05880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7322046..7322497 | 705..1127 | 91 | <- | Minus |
| 3L | 7322555..7323112 | 147..704 | 100 | <- | Minus |
| 3L | 7323178..7323310 | 14..146 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:05 Download gff for
FMO05880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7315146..7315597 | 705..1127 | 91 | <- | Minus |
| arm_3L | 7316278..7316410 | 14..146 | 100 | | Minus |
| arm_3L | 7315655..7316212 | 147..704 | 100 | <- | Minus |
