FMO05882.5prime Sequence
1254 bp (1026 high quality bases) assembled on 2008-09-02
> FMO05882.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCTCTGTCCAT
CTTCTCCCTGGTCACTGGTCTTTATGTCCTGCACTTCTCCATAGCTCTGA
TCCTGGTCAACAAAGAGGTGCCCCAAACGCGCGGAATGCTGTACCCCAGG
GAATCGGAGACGCGGGAGGTGCGATCTCTGGACGGGATCTGGAACTTTGT
GCGCTCCGACCAGGCGAATCCCACGCAGGGCGTCCGGGATGAGTGGTATG
CCAAGGAGTTGAGCAAGAGCAGGCCCACAATACCCATGCCGGTGCCGGCA
TCCTATAATGACATAACCACGGACAATTTGAGGGATCACGTGGGCACAGT
GTGGTACGACCGCAAGTTCTTTGTGCCCCGATCGTGGTCAAAGGATCAGA
GGATATGGCTGCGATTCGGCAGTGTTCACTATGAGGCATATGTGTGGATC
AACGGCCAGAAGGTGGTGAAGCATGAAATGGGTCACCTACCCTTCGAGGC
GGAGGTCACCGATCTTCTGAGCTATGGAGCCGAGAATCGGATCACCGTTA
TGTGCGACAATGCTCTGATTCAGACAACTGTGCCGCAGGGCAGGATTACG
GAAGTGCCCAACGATGGTGGCATGACCATTGTGCAGAGCTACACCTTTGA
CTTCTTTAACTATGCGGGAATCCACAGGAGCGTGCATCTTTACACCACGC
CCCGTACTTTTATCGAGGAGGTTGAGGTCACCACAAACCTTTCAAAGGAT
GCCACCGTTGGCGAAGTGTTCTATAGCGTAAGCGTGAATGGCAGCGCTGC
CAACGAGGCAGATAATGTCTTGCAAATCCAGGCCAATTTGTACGATAATG
ATGGCATATTGGTGGCGAATGCCACGTCGGACCAAAACTTGGCGGCCAGC
TGCAAGTGAACCCGGTGAGCCCTGGTGGCCCTACCTAATGCATTCCGAAC
CGGGTTATCTGTACCAGCTGGAGATCAATTTGCTGGCGACCACGATGAGC
TCCTGCTGTCTACCGACTGAAGTGGGAATACCCCACTAAGCTGGAACAGC
CAGCAGTTCTTGATCACCGGTCAGCCCGTTTACTTCGTGGATTGGACCAA
CAGAGATCCGAATTCAGGCTAAGTCTGGACATGCCACTGATGGTGCGCGA
ATCATCTGCTCAATGGAATGGTAGCAATGCCATCCAGCTCTATACCCGAC
CAAGATCAGGCAATGTGCGGAGTAGACCGCACTACGTGTATATGCTAACC
TAGA
FMO05882.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15117-RA | 2487 | CG15117-RA | 301..1451 | 37..1171 | 5035 | 96.8 | Plus |
| CG15117-RC | 2211 | CG15117-RC | 20..1175 | 32..1171 | 5030 | 96.6 | Plus |
| CG15117-RB | 2338 | CG15117-RB | 154..1302 | 39..1171 | 5025 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19124537..19124941 | 444..40 | 2025 | 100 | Minus |
| 2R | 25286936 | 2R | 19124105..19124418 | 757..444 | 1570 | 100 | Minus |
| 2R | 25286936 | 2R | 19123702..19124037 | 1086..757 | 1230 | 95.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:17:15 has no hits.
FMO05882.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:28 Download gff for
FMO05882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15117-RA | 291..1451 | 27..1171 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:38:33 Download gff for
FMO05882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15117-RA | 232..1392 | 27..1171 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:56 Download gff for
FMO05882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15117-RA | 291..1451 | 27..1171 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:56 Download gff for
FMO05882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19124105..19124417 | 445..757 | 100 | <- | Minus |
| 2R | 19123607..19124036 | 758..1171 | 91 | <- | Minus |
| 2R | 19124537..19124946 | 32..444 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:28 Download gff for
FMO05882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15011112..15011541 | 758..1171 | 91 | <- | Minus |
| arm_2R | 15011610..15011922 | 445..757 | 100 | <- | Minus |
| arm_2R | 15012042..15012451 | 32..444 | 99 | | Minus |
