FMO05883.5prime Sequence
1230 bp (1061 high quality bases) assembled on 2008-09-02
> FMO05883.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGCTGAAACCAAAG
CCAATCCCTTCGACATGGACAGCTCCAGCTTCGATGCGGAAAAGTATCTG
GAAAGGTTGCTCAAGGATTGCTCCTTAAAGCAAATAATGGATACGGAGGC
GGCGGTGGTCAAGGACACACAGACATTGCACTCTGATATGCAGACGCTGG
TCTACGAGAATTACAACAAATTCATCTCCGCCACGGATACAATTCGCCGG
ATGAAAGATGACTTCAAGCAGATGGAAACGGATGTGAACCTACTGATGAC
CAAGATGCAATCCATAACGACTTTTAGTGAGCAAATAACCGGAACGCTGC
AGGGCACCAGATCGCAACTATGTCGCCTGTCCGAGAAACACTCGCTCCTC
AAAAGGCTGCAGTTTCTCTCAACTCTGCCAGCTAAACTGAAGTCCCTCAT
CGAGGAACAGAACTACGCACAAGCTGTCCAGGACTACCTGCATGCCCAGA
AGGTGTTCGCCCAGTACGGTCGACAGCCGTCCTTCGATGGAATCCAGCGA
GATTGCGACGCCATCATGGCAGATCTCAAGGAGCAATTGCGAAGTGACTT
TCAAAGGGCTGGGAACACGGCCCAATCCTTGACGGAAATTGGAGAGCTAC
TCCTGCAGCTGGACGAAAAGACTTCGGATCTGGCAAGCGAAATGCTGACT
TGCGCTGGCAAACGACTGCACGAGCAAATCGTCATGCTGCAGGATCAAAC
AGAGCGTGATATGCTGGAGTTTGTGGACATGGGCATCGATGGTTTCCTCA
CGATCTGGCACTGGTAGTGACTTCCTACTTTGACATGTTTGTGGCCAAGC
ACTACGAGCATGAGCGCGATGACTTTCAGGAGACGCCCTGCAGGAGCTAA
ATGTCTTCCTCAATCAGAACATCGAAAGTATCTGACACTCGTCCAGGATC
GTGTTGAGTCCGACATTGGCTACGGCGATACCAAGGTATGCTACGCGCTC
TGGATCGACTTCATCGGCGCCTTCAGGCCATGCTAAATATCTGCCGCGCT
TGAGTCCACGCACCAAGTATCTATCATTATTTCCGCTGCCCACACTATGG
CGATGCCATGCAAAACTCAGAATCACTTTGGCGACGTTTGAATGCGTTCG
CTGTCCTGGGTTCTGCAGAGCAATCACGCCTGTCCATCTGGGTACTGTTA
ACACCTTTAGTGTCGTGGGAGAAAAATAAA
FMO05883.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15087-RA | 2418 | CG15087-RA | 91..1241 | 35..1166 | 5135 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18709867..18710621 | 866..113 | 3725 | 99.9 | Minus |
| 2R | 25286936 | 2R | 18709622..18709807 | 1048..866 | 750 | 97.3 | Minus |
| 2R | 25286936 | 2R | 18710694..18710775 | 116..35 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:31:09 has no hits.
FMO05883.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:34 Download gff for
FMO05883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-RA | 91..1182 | 35..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:38:34 Download gff for
FMO05883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-RA | 86..1177 | 35..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:07 Download gff for
FMO05883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15087-RA | 91..1182 | 35..1115 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:07 Download gff for
FMO05883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18710695..18710778 | 32..115 | 97 | -> | Minus |
| 2R | 18709572..18709806 | 867..1093 | 94 | <- | Minus |
| 2R | 18709867..18710618 | 116..866 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:34 Download gff for
FMO05883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14597077..14597311 | 867..1093 | 94 | <- | Minus |
| arm_2R | 14597372..14598123 | 116..866 | 99 | <- | Minus |
| arm_2R | 14598200..14598283 | 32..115 | 97 | -> | Minus |
