FMO05885.5prime Sequence
777 bp (776 high quality bases) assembled on 2008-09-02
> FMO05885.5prime
TTATCAGTCGACATGTGCTCGACTTATGGACTCTTATCTTTTGAGTTTTC
AGATACGGCTGCTATGGATCCAATTTTCTTCTCGCCAACGAATGGAATAC
CGTCAGAGAGTAAACTCGCCACTTATATGAATCGACAGAATGTCGCCACA
CCGAGCGGTTATGGGCTGAATAACGGGTTCTCACTACTTAATTTGGATTC
GCCCCTAAATAAAAAGTCCCAGGTCACGCCGCAGTCGCCCGAGTTCATTC
CAACGCGCCTTGGCTCGACGCCCAACTTCTATGCACCATATCACAACGCG
CCCATGCAATTAAGTAATGGGCTCAATGGCGTCAATGGGTTAACAGCCGC
CGCAGCATCAGCAGCAGCAGCCGCCGCCGCCGCCGCAGCAGCAGTTCCCT
CCTCCACGTCATCGGCGTCCTCCGCCTCGGTGACCATCAGCAAAACGGCC
AACGGTGGCGCCTCCATGCTCGCCCTGCAAAAGACCGCATCCATCGCCTC
TGTAACCATCGCACAACAGCAGCCACAGCATCCACAGAAACAGCAACAGC
ATCCGCCGTCGGTGGGCGGAGGAGCTGTGTCCGCCGCCTCCGCCCCCATT
GCCATTAGTGGCGCTCCACCGAATCCCGCCGCAGCTCCGTTCGTCAGCAG
CATGTCCGCTCAGACGCCGCTCAAGGGGAGGGGCGCCATGATGCGCCAGG
AATCACCAACGGCAGCCATGATTTCGGGCGCAAGGGCCAGGTGAGAAGTC
GTCACCGCACGGGATGACGCCGCACGG
FMO05885.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11486-RG | 3281 | CG11486-RG | 577..1340 | 13..777 | 3770 | 99.6 | Plus |
| CG11486-RQ | 3277 | CG11486-RQ | 610..1336 | 50..777 | 3585 | 99.6 | Plus |
| CG11486-RJ | 3133 | CG11486-RJ | 466..1192 | 50..777 | 3585 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3085198..3085757 | 217..777 | 2725 | 99.5 | Plus |
| 3L | 28110227 | 3L | 3084807..3084909 | 129..231 | 485 | 98.1 | Plus |
| 3L | 28110227 | 3L | 3083731..3083809 | 51..129 | 395 | 100 | Plus |
| 3L | 28110227 | 3L | 3079989..3080028 | 13..52 | 200 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:01:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2394 | 478..553 | 148 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6668..6794 | 434..553 | 148 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6773 | 513..553 | 142 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2364 | 513..556 | 139 | 79.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6745..6818 | 484..556 | 133 | 69.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1145 | 469..556 | 132 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6841..6884 | 513..556 | 130 | 77.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2599..2799 | 342..553 | 126 | 54.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6766..6838 | 484..558 | 126 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1545..1588 | 514..557 | 121 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2333..2373 | 513..553 | 115 | 75.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1123..1163 | 513..553 | 115 | 75.6 | Plus |
FMO05885.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:28 Download gff for
FMO05885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11486-RG | 571..1340 | 5..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:38:55 Download gff for
FMO05885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11486-RG | 576..1345 | 5..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:07 Download gff for
FMO05885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11486-RG | 571..1340 | 5..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:07 Download gff for
FMO05885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3079983..3080028 | 5..52 | 91 | -> | Plus |
| 3L | 3083733..3083809 | 53..129 | 100 | -> | Plus |
| 3L | 3084808..3084900 | 130..222 | 100 | -> | Plus |
| 3L | 3085204..3085757 | 223..777 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:28 Download gff for
FMO05885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3079983..3080028 | 5..52 | 91 | -> | Plus |
| arm_3L | 3083733..3083809 | 53..129 | 100 | -> | Plus |
| arm_3L | 3084808..3084900 | 130..222 | 100 | -> | Plus |
| arm_3L | 3085204..3085757 | 223..777 | 99 | | Plus |
