FMO05886.5prime Sequence
1258 bp (1033 high quality bases) assembled on 2008-09-02
> FMO05886.5prime
GCATACCTTATACGAAGTTATCAGTCGACATGGCTGCGCACTTTTTTCGC
ACTGCATTTTACGCAACGGCGGCCAGAAAATCGATGAGTCTGCCCTTCGC
CGGCCGGACAGCCGCAACTCTAGCCGTGGGCCTATCATTCGGTGCGCAAA
ATAGCCGGGCAGCCGTGCCGTACGAGAATGCCTACGCGGACAGCTTCTTC
GGGGGCTGCCAGACGCAGGGACTGCTCCAGCGGATTCCCCAGACCGGATA
CATCCAGCCCCCGCTGATGCGGAACTTCTCGAGCCTGCAGACGGGCCACC
AGCAGCAGCAGCAGCCGGCTCCAAATAGTGCCATGGCGCCGTCGAACAAT
CGCCGGTACTTATCCTCGCAGGATATTACCAAGAACATGACCCTGTACAC
CAGCACCAAGACCCAAGTTGAGGTGGATCCCAAGACGCTGGCCTTCAAGA
AGCCCACTGGCAACCCACTGGTTCTCATGATGGCCTGGCTGATGGCCAAG
CAGAAGCATCTGAAGAAGTATGCCCAGATCTACACTGAGATGGGATTCGA
TGTGGTGGTGGTGCACATTACGCCGTGGCAGCTACTCTGGCCGGTCAAAG
GATCCCAGGTGGTGGCCGCCGAGACTATTCGATTCCTGGAGAACAACAAG
TCGTACGAACCCATTGTGATGCATGGCTTCTCCGTGGGCGCCTACCAGCT
GGGCGAGATCATGCTGCAGATGTCGCGCGACATGGATCGCTATGGTAGCA
TTCTGGACGCTTCGTGTGCCAGGTGTGGGACAGCGCCGCCGACATCACCG
AGATCCCGGTGGGCGTGCCCAAGTCGATCTTCCCGAGGAACGAGCGAATG
CAGAGCGCCCTGCGCACTATACGCTGTACCACCTGAAGACATTCCACACC
AGGCCACCATCCACTACATGCGCCCAGCCAGATGTTCCACTCCACGCTGC
TCAAGGCCCCGGCGCTGTTCTTCGTGTCCGACAACGATCCCATCGGTCCG
CCGTCCTCCAACCAGTCCGTTCGCGAAGAACTGGGATGGTGCGAACATCA
GTACCTTCAAGGTGCTGGGAGCCGGTCCCAGCCCGCCGGCCCACTATATA
CCGCATCCGCGAGGAGTACTGCGACGCTGTTTCCAGCAATCGGAGACTGG
GGGTCTTGGAAGGCCATCGGGTGCCGAACGCGCCAAGCAACAAGCTTCTA
GACAATGGTTGAGCGGGACCGAGGTAGGTGTCTATTCACTAAATACGATC
ATTATACC
FMO05886.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)k09913-RE | 1590 | CG3082-RE | 101..1264 | 30..1187 | 5230 | 97.6 | Plus |
| l(2)k09913-RC | 1944 | CG3082-RC | 455..1618 | 30..1187 | 5230 | 97.6 | Plus |
| l(2)k09913-RA | 1881 | CG3082-RA | 392..1555 | 30..1187 | 5230 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23070961..23071477 | 605..1119 | 1990 | 96.6 | Plus |
| 2R | 25286936 | 2R | 23070607..23070900 | 327..620 | 1425 | 99 | Plus |
| 2R | 25286936 | 2R | 23067946..23068128 | 144..326 | 915 | 100 | Plus |
| 2R | 25286936 | 2R | 23067727..23067841 | 30..144 | 575 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:43:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G5 | 4856 | G5 G5_DM 4856bp | 2673..2730 | 428..485 | 110 | 65.5 | Plus |
FMO05886.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:20 Download gff for
FMO05886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k09913-RA | 385..1518 | 22..1152 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:38:57 Download gff for
FMO05886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k09913-RC | 467..1600 | 22..1152 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:09 Download gff for
FMO05886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k09913-RA | 385..1518 | 22..1152 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:09 Download gff for
FMO05886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23070607..23070888 | 327..608 | 100 | -> | Plus |
| 2R | 23067947..23068128 | 145..326 | 100 | -> | Plus |
| 2R | 23067720..23067841 | 22..144 | 97 | -> | Plus |
| 2R | 23070965..23071512 | 609..1152 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:20 Download gff for
FMO05886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18955243..18955364 | 22..144 | 97 | -> | Plus |
| arm_2R | 18955470..18955651 | 145..326 | 100 | -> | Plus |
| arm_2R | 18958130..18958411 | 327..608 | 100 | -> | Plus |
| arm_2R | 18958488..18959035 | 609..1152 | 95 | | Plus |
