FMO05887.5prime Sequence
1274 bp (1086 high quality bases) assembled on 2008-09-02
> FMO05887.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGACATATCTGGT
GGGAATACGTCGCGCCAGCCCCAAAAGAAGTCCAACCAAAACATCCAGGT
GTATGTGCGCGTCAGACCCCTTAATTCTCGGGAACGTTGCATCCGCTCGG
CCGAAGTCGTGGATGTGGTCGGACCACGGGAAGTGGTCACCCGCCACACG
CTGGACTCCAAGCTCACCAAGAAGTTCACCTTTGACCGCAGTTTTGGCCC
CGAGTCCAAGCAGTGCGATGTCTACTCCGTCGTGGTGTCTCCGCTGATCG
AGGAGGTCCTCAATGGCTATAACTGCACGGTGTTTGCTTATGGCCAGACG
GGCACAGGGAAGACCCACACCATGGTGGGCAACGAGACTGCCGAACTGAA
ATCCTCCTGGGAAGATGACTCTGACATTGGCATCATACCGCGCGCTCTGA
GTCACCTTTTCGATGAGCTGCGCATGATGGAGGTGGAGTACACTATGCGC
ATTTCCTACTTGGAACTGTACAATGAGGAGCTGTGCGATCTACTGTCCAC
CGATGACACCACCAAGATACGCATTTTCGATGACAGCACCAAGAAGGGAT
CGGTGATTATCCAGGGCCTGGAGGAGATACCAGTGCACAGCAAGGATGAT
GTGTACAAGCTGCTGGAGAAGGGAAAGGAGCGTCGCAAAACAGCCACTAC
GCTGATGAATGCACAGTCCTCACGCTCCCACACTGTATTTTCTATAGTTG
TGCACATCAGGGAGAATGGCATCGAAAGAGAGGACATGCTGAAAATCGGT
AAACTGAATCTGGTGGATCTGGCGGGCAGTGAAATGTTTCCAAGGCTGGG
AATGAAAAGGGAATACGTGTGCGGGAAACAGTAAACATCAATCAGAGCCT
CTTGACTCTCGGTAGAGTAATTACCGCTTTGGTCGATCGCGCTCCTCACG
TTCAATATCGTGAATCAAGCTGACTAGACTGCTGCAAGAATCTCTGGGTG
GCAGGACCAGACCTCCATCATAGCCACCATATCGCCGGGCCACAGGACAT
CGAGGAGACCCTGAGCACTTTAGAGTACGCTCATCGCGGCCAGAACTCAA
ACAGCCCGAGTCAATCAAAGCTGAACAAAAGACTTGGCTCAAGGAATACC
GGAAAATCGACAGCTAAAAGATCTATGGCGCCAAGGACAAATGCATATTG
CAGGACCTATCAGGGAGAATACCTGAAGTGATCCGAACCAGGAGCTTAAC
AGAGAAATCTGTCGGTGCTCAAGC
FMO05887.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:51:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Klp61F-RA | 3871 | CG9191-RA | 271..1445 | 36..1190 | 5270 | 97.5 | Plus |
| CG32318-RA | 785 | CG32318-RA | 291..609 | 36..354 | 1595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:51:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1244317..1245000 | 1096..417 | 3160 | 98.8 | Minus |
| 3L | 28110227 | 3L | 1245193..1245496 | 417..114 | 1520 | 100 | Minus |
| 3L | 28110227 | 3L | 1246249..1246489 | 354..114 | 1205 | 100 | Minus |
| 3L | 28110227 | 3L | 1245561..1245640 | 115..36 | 400 | 100 | Minus |
| 3L | 28110227 | 3L | 1246554..1246633 | 115..36 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:51:56 has no hits.
FMO05887.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:43 Download gff for
FMO05887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp61F-RA | 266..1415 | 31..1165 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:38:58 Download gff for
FMO05887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp61F-RA | 295..1444 | 31..1165 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:23 Download gff for
FMO05887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp61F-RA | 266..1415 | 31..1165 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:23 Download gff for
FMO05887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1244237..1245000 | 417..1165 | 96 | <- | Minus |
| 3L | 1245194..1245494 | 116..416 | 100 | <- | Minus |
| 3L | 1245561..1245640 | 36..115 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:43 Download gff for
FMO05887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1244237..1245000 | 417..1165 | 96 | <- | Minus |
| arm_3L | 1245194..1245494 | 116..416 | 100 | <- | Minus |
| arm_3L | 1245561..1245640 | 36..115 | 100 | <- | Minus |
