FMO05888.5prime Sequence
1281 bp (1072 high quality bases) assembled on 2008-09-02
> FMO05888.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCACCCCCAAGA
CCGAAGGGGATAGGATTTAATACAGGAGCTACCCAACCCAGATCGAACTC
AAACACGCCAATGTCGGAGAGGCAGCAAATGGCTCTGCTCATCCAAATGA
CAGCCAACTCGTCGACAGATTCATCCCGCACCACCTTAAAGAAGAATGAA
TGCAAGAAAGGAGACGCAGAGACTGACGAGGGCAGCCTGAATGAGAAGCA
AGAGGTCCTGGACACGAAAGACAAATCTTCAGCGGAGGAGAGCAGCAACG
ATGGTAAATCCAGCGATACGAATCATCAGGGAACTTCGGCTGCCAAGCGC
TGCTACTCAGACATAGAGGAGGACTACGAGGAATCTGGCGAGGACGTAAA
GAAAAAGAAGCGCAAGGATTCGGAGCATGGAAAGGACGTGAAGGGGGCCT
CCCTGAAGCTCACATCGCGCGTGGAGAAAAGCTCCAAGCTAGCTGCAACG
AAGGGATCCCCGTCAGGAAACAAAAGCAGCGCTTCCAATGCCGAAAAGGA
GCCGGCGGAGACTAGTAAGAATGTAGATATTGAGAACGAAACGGAGTGCA
GCGATGATTACAAGAGTAACGACAGCCTATACAACGGAGGACTCAAAGTG
CCGCCATTAAAAATTGTGATTCCGCAGCAGAACTGCTCAATCGACACTGA
GGGCAATGTGCTTCGAACTGGCAAGGTGACTGCCTCTCGCAATGCCGCCC
TGCCGTATGTGGTCAGCTCCAATAGCGATTCCATTGACACCGTCATAACC
AATCAATCTATTAGCCCGCACGAAAGTCCACAGAAGAGCAATAGCATTTG
CTCCACAGCCCTCGATGACAAGAATATAAAGCTCTTCAATGACGAAAAGA
ACCTGAGGGTCCTGCGAAGCTCTCATCGCACTGGAGTGACCAGTGTGGAG
CGCAGTTCCAATAACTCCTCCCCGCAAATGCAGAAGCAGCTTCCCATCGG
CAGCGTCATCGAATCATGCCAACGATCCTGCGATGTTGAAGCTCTCCTAT
AGCACATGACATCTTAGTCCGATTCCGCGGGCACAGTTTGACCAGGAGGC
ATCCACATGTTCCAAGCCCGTCGACGTCGTCGAACTTCTCGTCAAGGACA
TAAATTCCTGACGTGGACTCCATCCACGAAGCGAAGATTCCACGGAACGC
ACGCAACGGTCCGAGAGATCACTCAATGCGCGGAATTCGGTTTTCAACGC
TCTCGAAGATCTCACCCCGGATGACATCCGC
FMO05888.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10984-RD | 2285 | CG10984-RD | 118..1289 | 36..1197 | 5305 | 97.6 | Plus |
| CG10984-RA | 2267 | CG10984-RA | 100..1271 | 36..1197 | 5305 | 97.6 | Plus |
| CG10984-RC | 2254 | CG10984-RC | 87..1258 | 36..1197 | 5305 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12751304..12752302 | 166..1159 | 4390 | 97.3 | Plus |
| 3L | 28110227 | 3L | 12750607..12750739 | 36..168 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:15:32 has no hits.
FMO05888.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:01:20 Download gff for
FMO05888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10984-RC | 87..1258 | 36..1197 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:39:00 Download gff for
FMO05888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10984-RA | 95..1271 | 29..1197 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:56 Download gff for
FMO05888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10984-RC | 87..1258 | 36..1197 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:56 Download gff for
FMO05888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12750602..12750739 | 29..168 | 97 | -> | Plus |
| 3L | 12751307..12752345 | 169..1197 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:01:20 Download gff for
FMO05888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12743702..12743839 | 29..168 | 97 | -> | Plus |
| arm_3L | 12744407..12745445 | 169..1197 | 97 | | Plus |
