FMO05889.5prime Sequence
1211 bp (1040 high quality bases) assembled on 2008-09-02
> FMO05889.5prime
ACCTTATACGAAGTTATCAGTCGACATGGACGATGCCGATGATCTGCGCA
TAAACCAGCAGCAGCTTATGGACGAGATTTCGGCCCTCTTGCAGAACACA
GCGAAGCCGAGCGCCGCCAACGCACTGCAGCTGAATCAGGAGCTCCAGCG
CCGGCTCATGCAAGTCCGGACCAAAATTCTGGCCATGTTACAAGTAGTAA
GGGCCCGCTTCTCTCGGAACGAGGACATCCTGGTGCGCCGGCTGCGACCT
CGTTCCCATTTCGGCCCGAATTCCCTCAATCTTAGCGGGGCGATCCTGCG
GAAGGGCACGTTTCGCTTCAAGGGCAACCTGTTTTTCCGAGACATCGATG
GTCGAAGCTGTCCTAACAACGAGGATTACGAGGCGCGGTGCCACACGGAG
ATGTTTCCCACCGACTTTGACATGCACTCCAGACATGTATGGACATTGCT
AGACAAAAAGAATGTGATAATGGGTATAAAACAACAGTTACTGGAGCATA
GGGCCCACAGTACGAATGCGCTGCCCAGCGGAAGCCTGAAGCGCAAGCCA
ATCGAGCGACACTTAAGTACACTGGTAAGTCTGCTGGCAACTGCGGATAG
TAGCTTCAGCATCGACTGGAACCAGATCAGCACCCTGGACTTGGAATATC
GGCACTCACCATATAGCTGTGAGGCAATGTGGAGGGTCTACTTAACACCA
GATCTCAGGCGAGACGATTGGTCACCCGAGGAGGACGAAACTTTACTGGC
GGTGGCCACTGCGAACAGGATGCAGAACTGGGAGTTGATAGCCGCGTCGC
TAGACCGACGTTCCGACTATCAGTGCTTCGTACGCTTTCATACCGCCCTA
CGTTTTCTGCTGGAGCCAAAGAACAGCCACCGCTGGAGCGAAGAGGACAC
GATAAACTAAGGCGATCGTTGATAGGAATACGGCAACAGTGTATAACTGG
AAAAAGTCGTGAATACTTCCCGACAGTCCAAATCACGCTGATGTCGTACT
ACTACGTGTTGCATCCTAGCATCAGTCACGAACCTCACTACAAGGAGGAC
ATGATGCTGTCGCGCGATGAAAGTACATGGAAGTTTCATGTTTCGCGTTC
TCTTTCCAACCGGTCGTTAACCACTCGACTCGCTAACAAAAGTAACTGCA
ACGTACGACGATCTGGTCGTCAGGACAACAGCTATGACTCTAAAGCATCG
GGTTCCCAGGT
FMO05889.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pbp95-RA | 2649 | CG2702-RA | 48..1172 | 26..1122 | 4950 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8013838..8014299 | 26..487 | 2310 | 100 | Plus |
| 3R | 32079331 | 3R | 8014408..8014966 | 485..1030 | 2205 | 97.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:43:08 has no hits.
FMO05889.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:22 Download gff for
FMO05889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbp95-RA | 44..1189 | 19..1135 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:39:01 Download gff for
FMO05889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbp95-RA | 11..1156 | 19..1135 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:11 Download gff for
FMO05889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbp95-RA | 44..1189 | 19..1135 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:11 Download gff for
FMO05889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8013834..8014299 | 19..487 | 99 | -> | Plus |
| 3R | 8014411..8014966 | 488..1030 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:22 Download gff for
FMO05889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3839556..3840021 | 19..487 | 99 | -> | Plus |
| arm_3R | 3840133..3840688 | 488..1030 | 97 | -> | Plus |
