FMO05891.5prime Sequence
1235 bp (961 high quality bases) assembled on 2008-09-02
> FMO05891.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTTGTTCCGCTCAG
CGAAAAGCAAGTTCGACGCCGGCGACGTGATGCGTCGAATGAAACGCCTG
GCGGAGGGCACGATCTCCTCGTACCGCCGCTTGTTCCTCCTGCTCCTCTG
CGTCTGTGTGGTCTTCTATATGATTCCGCCGATCTTTCGCTATATCTTCC
TTAGTGCTCCAGAACAGAAGGATCCCCACAGTATGTGCATGGATGACCGG
CTGACGCCCTTCATCCTCCAGAACTTTGAATTCGATGCCAATATCCGTCA
CGTGTCACCAGCGAAAATGCCTGGTGAACGCGATTTCACGCCCTACGTCG
GCAACGGCTACCTGGGCCTGGAGATCGCACACGACGCTTTCCTGAACATC
AAGAATGGCAGGGCCATGCAGCTGCCTATTCCTTTCCAGCCGGTGGTCTC
CGTTTCGGGAGGATCCGCATCTGGCGGCGAAAAGGAAGCCACTGTCGTCG
AATATCTGACGGGAATGGTGCATCGGTTCCAATGCTTTGCCGGTTACTTT
GTTTCGTACACCTACTACGCCCATCGCACTCAGCCGAATATCTTCATGCA
AGAGCTGCAGATCACAAACACCAGGAACCTCTTGGAGGACATAGAACTGA
TCATGCCACGCGTCAATCTCCAGAAGCTCACCAGGCGAACTGTTCCCCTA
AGTGAACCCGTCTCCGTGGGAGTGTTCACCTACACAGAGTTGGAGGTGCT
CTCGGGCACAGTCCAGCTTCAAGCAGAAAATCCCAGTAAATCCATTGTTA
TAAGCATAGTGAAGCCGCAGATGGACTCCAAGCTGCAGCTGAGAAAGCGC
GGCACAGTGCGATTGTGTATCCCACAGCAGTGCATTACTCAAAACAAGTG
GCAGAGGAAAAAATCGGTGTAAAAGCGAGACCATCGAGCAGCAGCCACTC
AGCGATGGCGAAGCTGCTCAAAGCTTGCTCCAAGCCCTCAAACCAAGATC
CTTGAACAGCGTAAACATCTATCGCAGGAGCACATTGACGTTTGGACTGA
TTTGTGTGGCACTGGATTACGATAGCACATCAAGCGAAAATAGCTGAACG
GCGAACGCATCATGCCCGATGTATGCGTCTCTCCCAGTGTCACTCAGTCA
GAGAGCAGTGGTTCAAAGGAATGCTGCTACTGAGATAGCAAGGCTAACAA
CTTCATTATCACACTCGGAGCGGAGAAAATCTGTG
FMO05891.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7289-RA | 2130 | CG7289-RA | 96..1217 | 35..1137 | 5010 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1982546..1983402 | 221..1068 | 3765 | 98.1 | Plus |
| 2L | 23513712 | 2L | 1982312..1982498 | 35..221 | 935 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:12:25 has no hits.
FMO05891.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:02 Download gff for
FMO05891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-RA | 96..1219 | 35..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:39:04 Download gff for
FMO05891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-RA | 79..1202 | 35..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:58 Download gff for
FMO05891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-RA | 96..1219 | 35..1140 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:58 Download gff for
FMO05891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1982312..1982498 | 35..221 | 100 | -> | Plus |
| 2L | 1982547..1983395 | 222..1062 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:02 Download gff for
FMO05891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1982312..1982498 | 35..221 | 100 | -> | Plus |
| arm_2L | 1982547..1983395 | 222..1062 | 98 | <- | Plus |
