FMO05894.5prime Sequence
1185 bp (994 high quality bases) assembled on 2008-09-02
> FMO05894.5prime
TTATCAGTCGACATGAGCTGCAAGGTGCGGCTGATGGAGGACGGCTCGCT
GGACGAGGAGCCGCTGACCCTCAAGGAGATCGCCTACCAGAAGCTGTGCA
ACAATCTGGACATCATTAGCAGCCACCGGCCAGATGGCCAGCGCGGCCTC
AATCCGGGCATTGTGCTGCCCAACGAGATCTGCGACGGCTTCCTCGAGAA
CTATCAGCGATTCAATCGCCCGCTGGACGACAGCGTCATCCGCCTCTTCG
AGGACACACACCGCACTTCGCTCAAGATCGTCAATCTTCGCAACAGCACC
CTAAGCAGTATAGGCTTGGAGACTCTGATGCGGCACAAACTGTTCGCTTT
GTCCTTGTGGTACTGTGACATGATATCCGTTGGTTCCCACCACCTTCTGG
CCCACTACGGCGACAGTCTGCGATCCCTGGAATTGGGCATCAGTTCCCAT
CTGCTGCAGTACGCGGAGCCCAACGAGAAGGAGCCAGTGGACTTCCAGTT
GACTTGTCCGCATCTGCGGCGGCTGGTGCTCAACGGTGTTGTGATGCACC
ACCGCCTGCAGTTCGCTCACCTCCACGACTTGGGCCACCTGGACCTGACC
TCCTGCGTGCTGGCCAACTTCAGCCTTGAGGCATTGGGCTCGCTGCCCAA
TCTGCACACGCTCATCCTGTTCAATGTGTGGCCCATCGCCAACCAGCTGC
ATGCGATCTGCTGCCTGAGGCGTCTGTGCACACTGGACATATCCATCTCC
AGTTCCGGAAATGGCCACGGCACCTACGACCTGCCCGATCAGACGCTGGA
GATGCTGATGGACAACTTGCGACATCTCACACATTTGGATATCTCTGGCA
CGATTTTGGCCGGCACGGTGTGCCACCAAGGAGTCGACACTACCAGTGGC
ATGCAGCAGAGCCCCAAATGGAGCACACTTTGCCCTCAAGACACCCGGGG
CTAGCGTCCCGCACCAGCGACCGCTGCAGTTCTAGTCCTCTATCACACGT
CCACTGGGCCTGCAAAAACCCGAAAATCAGCTTTGGAGGTACTGGCGATG
CCACGAGCAGCAATCCTTTACTGCGGGCCTATTACCACGACAGACCATGC
TCTGAACAGATTACCGACTGTACCATCTCTTTCGCTCGAAACGTAAGCCA
TACCACGCACATGTAGTGTGTGTCTCCGCCTGGAT
FMO05894.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12084-RB | 3483 | CG12084-RB | 383..1529 | 13..1136 | 4970 | 96.9 | Plus |
| CG12084-RA | 3148 | CG12084-RA | 383..1529 | 13..1136 | 4970 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1493469..1494270 | 1097..312 | 3080 | 96.6 | Minus |
| 3L | 28110227 | 3L | 1494589..1494890 | 314..13 | 1510 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:00:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 4395..4477 | 504..422 | 116 | 65.9 | Minus |
FMO05894.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:21 Download gff for
FMO05894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12084-RA | 383..1543 | 13..1147 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:38:51 Download gff for
FMO05894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12084-RA | 407..1567 | 13..1147 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:03 Download gff for
FMO05894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12084-RA | 383..1543 | 13..1147 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:03 Download gff for
FMO05894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1493409..1494268 | 314..1147 | 95 | <- | Minus |
| 3L | 1494590..1494890 | 13..313 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:21 Download gff for
FMO05894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1493409..1494268 | 314..1147 | 95 | <- | Minus |
| arm_3L | 1494590..1494890 | 13..313 | 100 | | Minus |
