FMO05895.5prime Sequence
1215 bp (1052 high quality bases) assembled on 2008-09-02
> FMO05895.5prime
ATACCTTATACGAAGTTATCAGTCGACATGAATAATAATCTTTTTGAGGG
CTCCGACGACGATGGGGAGGATCTGCAGCTGTCCACGAACAAGGACTATG
CCAAGACCTACAACATCCTGCGCAAGAAAGAGCTACTACAGAAATATAAG
GATCGTGGCTTGGATGTTTCCGAATCGGAATTCGACAGTGACAGCTCGTC
ATCCGAGGAGGACGAGGTGGACCCCAAATTCGACCAGGACTTCTTCAAGA
CCCTGTCCTCGCTGAAAAGTAAAGACCCATGTATCTACGACAAGGGTACG
AAATTCTTCAGTGAGTCCTCCGGCGATGAAGATGATAAGGATGGGGAGGC
TCCGAAAAAGAAGAAAAAAGCCAAGCCAGTCACTTTGAAGGACTACGAAC
GAAAGGTAATTTTGGAGCATAATGGCAAGTTCGAGAGTTCAGATGAGGAG
CAGCAGGAAAAGGAGCACGAGGAACTCCAACGTGCGCAGTCACCGAGCGC
CGTGGAGGAGGAGCGCCGTCTAAAGGCCGAGTTCCGGAAGGTGATGAACA
AGGAAGACGACAGTGAGGATGAGGAATTTGGAGGTATATTCAAGAAGCGC
AGTAAGACCAAGGAGCAAACAGCTGCCGAGGAGGCAGACTTTGCCAAATG
GTTGGCGGGAAAACAAGCTGAGATTCAAGAAACCGACAAGAAGCAGTTGG
AGCCTCTAAAACAGTACTGGAGCAGCAACAAGCTGACCCAGGGCGAGAGT
TTCCTCAGGGATTACATTCTCAACAAGGGCTATGCAAACACGGATGAGTC
CGCCATTCCCACCTACGATGAGATCGTGGGCGAAGCTGCTCCGCTCTCCG
AGGATGAGCACGAACTTGAGAAGCAGGCAGAGTTTGAGCACAAGTACAAT
TTCCGCTTTGAGGAGCCAGATGCGGACTTCATAAAGCGCTATCCCCGCAC
CATCGAACAATCCCTGCGTCGCACGGATGACAGAGGAAAGAAAAACGCAA
GAGCTGAGGAGCGCAGATCAGGAGAAACAGCAAAGATGAGGATGGACTGG
TCAAGGAAATGACGTAGGAAGATCGATGAAAGATACCGCAATTAAGCGTT
CACTGCAACGATGAGCTTGGTTCGACCAAGAACTCGAGGAGACTTGGACC
GGGCGTCAGATCGTCATGCGAACCTCTTCGCATGGATCTCCAGTGTCAGT
AAGGCAGGAACCATA
FMO05895.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5645-RA | 2745 | CG5645-RA | 73..1221 | 28..1155 | 5130 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12135557..12136450 | 1034..146 | 4240 | 99.3 | Minus |
| 3L | 28110227 | 3L | 12136512..12136634 | 150..28 | 600 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:24:50 has no hits.
FMO05895.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:22 Download gff for
FMO05895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5645-RA | 73..1221 | 28..1155 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:55 Download gff for
FMO05895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5645-RA | 70..1218 | 28..1155 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:08 Download gff for
FMO05895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5645-RA | 73..1221 | 28..1155 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:08 Download gff for
FMO05895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12135420..12136450 | 146..1155 | 97 | <- | Minus |
| 3L | 12136517..12136635 | 27..145 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:22 Download gff for
FMO05895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12128520..12129550 | 146..1155 | 97 | <- | Minus |
| arm_3L | 12129617..12129735 | 27..145 | 99 | -> | Minus |
