FMO05896.5prime Sequence
1160 bp (927 high quality bases) assembled on 2008-09-02
> FMO05896.5prime
TAACTCGGGATGATCCCCAGGGACCATGCCGCTACTGTGAATCGCCGGTG
GAGGACGACAACTACCTGGAGTGCCAGGAATGCAGGCGGATGGTTCACAT
CAAATGCCTGCCGCATGCTTGCACGCCCGGAGATCTTTTAGGCGACGTTT
TCTTCGAGTTCACGTGCGTCAAGTGTGTGCTGGATAAAGCTAAGGAATCG
GTCATACCCTCAGATCTAGAACCCATTAAGGAAGTGATCGTGCGCCAAAG
GATACCTTGGCTGCTGGTGCTCACCCTAACGCTCTACAATCTGTCCATCA
AACAAAAGGGCTTGGGACACCATGGATTCTTCCATTGGCGCACGCACATC
ATCAGTTTTGTGGACAAGAACTGGAACTATATATTCGGTCCCAATGTGCG
GCGTCGCAAGCAATGGACTGGTTCCGTATCCGGCGCACTGTCCCACAACA
GTCCGGAGTACTTTCAGTCTGGTCTGGATGTCTTTCAGGAGAACGGCTGG
TGGAAACTGGCCAAGCCCTTTCAAACCCCAAGAAGCGTTCTCAAAGAATA
TGAGAAAAAGCAACAGTTGCGGCTACAAATGCGTATTGAAAAGCGGTTGC
CTGCAGCGGACGAGACCAGCTGTAGCAGCGAGATCTCAGTGGCGGATCAT
GCCCAGGATAACCCACCGCTTATTAAAGCAGAAGCTGAGAAACCCCAGTT
CAACAGAGGGCTGTGCGCGAACAATTCCCTACATGGGCCGTTTGCCAAAG
ATACAAACACAACCTTCACCCTTGTACAGGAAACGCTTCCAGGGCCACCA
ATTCTTCAGAAAATATAGCGCCACCAAGTCAGAGGGAGGAATACCACAGA
ATCAGTCTATGAGCATTGTCCAGCAGGCTGATGGATTTTCTGGCTGAAAG
TTTGGAAAGCGATGATTTTACCATGCTTGGTACCTACCAGGCTAATGCCC
CCACCCCTGATTGGAGCGGTAAAATGATTTCTCATGACGACGGTTGCTCA
CGCACTTTGATATGGAAGTCTTTCAACATGATACAAATTTGGCTAACGAT
ACGCTGATGAACAAGCGATCACGAAAAAACCTGCACGAAGCGCAGGATCA
ATGAGGCAAGTTAAAATGTAAAGCCAGAATAGACGATTCTCGCATCTTCG
CTCCGTCATC
FMO05896.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atac2-RA | 2427 | CG10414-RA | 86..1141 | 1..1040 | 4655 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18611768..18612159 | 398..7 | 1960 | 100 | Minus |
| 2L | 23513712 | 2L | 18611010..18611260 | 969..726 | 830 | 95.2 | Minus |
| 2L | 23513712 | 2L | 18611327..18611501 | 725..550 | 830 | 99.4 | Minus |
| 2L | 23513712 | 2L | 18611557..18611708 | 549..398 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:31:21 has no hits.
FMO05896.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:21 Download gff for
FMO05896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac2-RA | 86..1101 | 1..1005 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:38:54 Download gff for
FMO05896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10414-RA | 79..1094 | 1..1005 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:30 Download gff for
FMO05896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac2-RA | 86..1101 | 1..1005 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:30 Download gff for
FMO05896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18611327..18611501 | 550..725 | 99 | <- | Minus |
| 2L | 18611557..18611708 | 398..549 | 100 | <- | Minus |
| 2L | 18610968..18611260 | 726..1005 | 93 | <- | Minus |
| 2L | 18611769..18612164 | 1..397 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:21 Download gff for
FMO05896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18611327..18611501 | 550..725 | 99 | <- | Minus |
| arm_2L | 18611557..18611708 | 398..549 | 100 | <- | Minus |
| arm_2L | 18610968..18611260 | 726..1005 | 93 | <- | Minus |
| arm_2L | 18611769..18612164 | 1..397 | 99 | | Minus |
