FMO05901.5prime Sequence
598 bp (583 high quality bases) assembled on 2008-09-15
> FMO05901.5prime
CAGTCGACATGTGGTGCATTGTCAACCTGCCCAACGGCACCCAACAAGCC
GTCAAGTGGGATCCCAAAGCCAATGGTCAGGAGTGTCTGGAGAAGGTCTG
TCGCGCAATGAACATCATCTGCGAGATGGAGTACTTCGGCCTGGAGCACT
GGACGCCCAACCAGAAGGAGTCGCAGACGCGCCAGTGGATCAATCTGCGC
AATCGGCTATCCGGCGACAGTGGCAGCAGCGGCAGCGGCATCCAGCTGAT
GCTGGCGCTGCGGGTCAAGTTCTGGGTGCCGGTGCACTTCATCCTGCAGG
AGAGCGTGCGTAATTTGTTCTACATGCAGGCCAGGCGGGATCTGCTCGAG
GGACGGCTCACTGCGCCGGACTGGAGTGGAGCGGCCAAGTTGGCGGCGCT
GCTCTGCCAGGCGGATGGTCTGCGATTCAATGAGTCGTCGCTGAAGGCCG
ACTGCCCGATGCGAATGAGGCGGGAGTTGGCGCAACAGCAGCAGCAGCAA
CAGCAGCAGGCGCATCAGCATATGTTGGAGCAGCAGCGCAAGGAGAAGGA
GCATGTGCTGAGCTTCAAGAAGCGCCGCCTGTCCAAGCAGAAGTCCTT
FMO05901.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dnr1-RB | 3553 | CG12489-RB | 555..1142 | 9..596 | 2910 | 99.7 | Plus |
| dnr1-RA | 3194 | CG12489-RA | 555..1142 | 9..596 | 2910 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22566189..22566691 | 596..94 | 2485 | 99.6 | Minus |
| 2R | 25286936 | 2R | 22592322..22592410 | 97..9 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:57:06 has no hits.
FMO05901.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:30 Download gff for
FMO05901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnr1-RA | 555..1144 | 9..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:26 Download gff for
FMO05901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dnr1-RA | 559..1148 | 9..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:25 Download gff for
FMO05901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnr1-RA | 555..1144 | 9..598 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:25 Download gff for
FMO05901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22566187..22566689 | 96..598 | 99 | <- | Minus |
| 2R | 22592324..22592410 | 9..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:30 Download gff for
FMO05901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18453692..18454194 | 96..598 | 99 | <- | Minus |
| arm_2R | 18479829..18479915 | 9..95 | 100 | | Minus |
