FMO05902.5prime Sequence
561 bp (373 high quality bases) assembled on 2008-09-09
> FMO05902.5prime
CAGTCGACATGAATTATCACAAGGCCAGTGAAAAGCAGTCGTCGTCCTCA
TTGAAGAAGCGGCCGCCGGGCAAAGGCAATAGCATACAAAACTTTTGGAA
CGATCGCATTATGGAGCGCTTCATAAAGGCGAATCTATTTATTATCTGCT
GCGTGGTGGCGGTTCTATTGCTGATCGTCTATCTGGGTGCCTTCTCGTGT
GAGGTCTCGTGGATACTGGAGGCCCACGGCGAGCTGCCCTTCGCCGCCTA
CACGCTCTGCTCGCTCTACTTTGTCATGTTCGTGGCCACCACGATCCTTA
TCCACGGCCTGGTCAGCGGACTCTGCTGGCCGTTGTTCGCCTGGTCGGGC
ATCATCGGTCTCCTCTCAATTCCAGAGCTGGTCTTTGTCATGATCATGAC
CACACAGCACTGGGGTCTGCAATCTGTGCATGGATTAACGGAGCTCACCT
CCTACCTGATTCGCCTCATCATCAACTGCTTCGCGCTGATCTGTGTGATT
CCCACGGGCATCATGTGGCAACAGGAGACTCAGGTGTTGAGTCAGCTGCA
AGGATTGGCCA
FMO05902.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd6-RB | 3135 | CG11175-RB | 984..1536 | 9..561 | 2675 | 98.9 | Plus |
| Rcd6-RA | 2574 | CG11175-RA | 423..975 | 9..561 | 2675 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20630025..20630266 | 414..173 | 1210 | 100 | Minus |
| 2R | 25286936 | 2R | 20630684..20630848 | 173..9 | 780 | 98.2 | Minus |
| 2R | 25286936 | 2R | 20629785..20629933 | 561..413 | 700 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:25:45 has no hits.
FMO05902.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:51 Download gff for
FMO05902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd6-RA | 423..974 | 9..560 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-09 11:03:08 Download gff for
FMO05902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11175-RA | 390..941 | 9..560 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:42 Download gff for
FMO05902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd6-RA | 423..974 | 9..560 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:42 Download gff for
FMO05902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20629786..20629932 | 414..560 | 97 | <- | Minus |
| 2R | 20630026..20630265 | 174..413 | 100 | <- | Minus |
| 2R | 20630684..20630848 | 9..173 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:51 Download gff for
FMO05902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16517291..16517437 | 414..560 | 97 | <- | Minus |
| arm_2R | 16517531..16517770 | 174..413 | 100 | <- | Minus |
| arm_2R | 16518189..16518353 | 9..173 | 98 | | Minus |
