FMO05904.5prime Sequence
1257 bp (1006 high quality bases) assembled on 2008-09-09
> FMO05904.5prime
CAGTCGACATGTCAGAGAACAAGGACGAGGCCTTGACCAGTTTTCAGAGC
ATTACGGGCATCGACGATGTGGGCGAAGCCTTTTCCCACTTGGAGGCCGC
CGACTGGAATCTTGTGGAGGCTCTAAGTCGCGTGATCCCGCACGAGGATG
CGCCGCTGACCAGTCCCCATCCTATCCTGGTGCCAGAGCCACCGGCCAGG
AATGCCGTGGAGAGCACGAATGGCTTCCGTCCGCCTGGCTTTGATGAAAT
GCCCGGGACTTCTAACGCGTCCGGTTTCTTTGCGGCCGCCCTTCAAAACC
AGAACCAAAACCTAAACCTAAATCAGCCGCACATCCAGCAAAGATTTCCA
ACGTCACAATTGCTAGCCCAGCTGACGTCCAGTATCAACCTGGACCCCGC
GTCCAGCCAAAACAACAACCAAAACGTGATCACCTTCAACATCCACTTTA
ACCAGCAGCTCTACCAGCTCCGTTTACCATCGGAGGCCACAGTTGAACAA
CTTAAACGCAAAATCTTTGCCGAGACAAGTGTGCCTGTGTGCAGGCAAGC
CATTCGCGGCTGGCCACCCTCCAAAGCCAGCGATGCACAGCAGCTGGGCA
CTCGTTTATGCAACCTAGATCTCTCCCCGGAGAATGAACTGATCCTGGTG
GACCTCACCGAAGACGGTTTCATGGACACCGAACAGGATGAAGTGACGCA
GCGCGTGGACAAGGACTTCACCATTTTCATACAGTTCGAATCGGACCTCA
CCACTCACTCTTAGCCTGCCAGGACGTATGACAGTGCAAGAGGTAAAGAT
GAAACGTGTTCGACATCAAGAGCATACCAGTGCGCCACCAGGAGTGGACC
GGCTGGCCCAACGGGTTGTGACAATGACACCCACTCTGGCGCAATCTGGC
ATTGGGCTCTCGCATAGATTCGCTGTTCGCAGCACGGAACGATCAGCGCC
AACAATTCCAATCAGCACAACGCATTCGATGTGGTGACCGGTGAACGTGA
GAGCTCGAACGGATGAGTTCGAAGATGCCACAGACTTCAACAACGCCGGA
GTACATATTTACTGAACTCGCCCCCGCCTCAACCCCCAACAGACACTTAA
ATACAAACGAAACGGAAGGATGAGATAAGTGGCTTCCACCGCCGATGTTG
AGAACTACAGGGCGGGTAAGGGCGAACCCGTTCCGAATTTTGGGCACCTG
GAACGCCAGCACCGTGGGGCCGCGCCTCCTGATACGGCCAAGAGAATCCA
CAACGCT
FMO05904.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| casp-RB | 2557 | CG8400-RB | 122..1298 | 9..1191 | 5240 | 97.1 | Plus |
| casp-RA | 2557 | CG8400-RA | 122..1298 | 9..1191 | 5240 | 97.1 | Plus |
| casp-RC | 2542 | CG8400-RC | 122..1283 | 9..1191 | 5005 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16027337..16027572 | 351..116 | 1180 | 100 | Minus |
| 2R | 25286936 | 2R | 16026866..16027057 | 686..495 | 960 | 100 | Minus |
| 2R | 25286936 | 2R | 16026620..16026812 | 881..686 | 830 | 98.5 | Minus |
| 2R | 25286936 | 2R | 16027135..16027278 | 495..352 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 16026339..16026547 | 1100..891 | 675 | 93.4 | Minus |
| 2R | 25286936 | 2R | 16027664..16027736 | 117..45 | 365 | 100 | Minus |
| 2R | 25286936 | 2R | 16027884..16027922 | 47..9 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:26:10 has no hits.
FMO05904.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:58 Download gff for
FMO05904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| casp-RA | 118..1253 | 4..1150 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-09 11:03:11 Download gff for
FMO05904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| casp-RB | 118..1253 | 4..1150 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:54 Download gff for
FMO05904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| casp-RA | 118..1253 | 4..1150 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:54 Download gff for
FMO05904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16026339..16026546 | 892..1100 | 94 | <- | Minus |
| 2R | 16026611..16026812 | 686..891 | 98 | <- | Minus |
| 2R | 16026867..16027056 | 496..685 | 100 | <- | Minus |
| 2R | 16027135..16027278 | 352..495 | 100 | <- | Minus |
| 2R | 16027337..16027571 | 117..351 | 100 | <- | Minus |
| 2R | 16027665..16027733 | 48..116 | 100 | <- | Minus |
| 2R | 16027884..16027926 | 4..47 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:58 Download gff for
FMO05904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11914116..11914317 | 686..891 | 98 | <- | Minus |
| arm_2R | 11913844..11914051 | 892..1100 | 94 | <- | Minus |
| arm_2R | 11914372..11914561 | 496..685 | 100 | <- | Minus |
| arm_2R | 11914640..11914783 | 352..495 | 100 | <- | Minus |
| arm_2R | 11914842..11915076 | 117..351 | 100 | <- | Minus |
| arm_2R | 11915170..11915238 | 48..116 | 100 | <- | Minus |
| arm_2R | 11915389..11915431 | 4..47 | 95 | | Minus |
