FMO05906.5prime Sequence
1189 bp (1012 high quality bases) assembled on 2008-09-15
> FMO05906.5prime
CAGTCGACATGAATCTACGGCCGCGATGCCGCAAGTGGCTGCCCCTAGCC
ACCCAGCAACTTCGACTGCGGAACCTTAACAGAATTCAGGGATTCAATAT
TGAGTCCTGGCCGCATGAGAAGTCGCTGGAGCTAGATGATCCGGATGATG
TGCTCCTCTACTACACACTACACACGGACAAGGCTAGCGAAGCGTTCTAC
ACCAGCGAAAAGCTGCCGCAGCGTCACCAACAGCAAAAGTGGGCGGAGAT
TTGTACGGACGACGAGGCCTGGCGGAAAACCAATGCGCAGTGTGTCTGTG
TCAAGGTGTGGAAGCACTATTCGGCGGAAAGAAGAGATGGCCAACCGCCT
GAGGTTGAGCAAAGACATAAGGATGTTTTCGGAAGATCCCAGTTAACGCC
CAGCAGGCTGCCACGCCCTCCTGAACTACTGTTCAGCTGGGGCGTCTACT
TCTCCGGCCTTATACCTCTGTCTCCCCTCACATTGTCCCAGTGCGGACGA
AATTGCTTGGTCTTTCAATTGAATGGCGAGCAATTTGCCTCCCCGTCGAT
GATAAGCGAGCAGGCCTTGCAGTCGCAGCTGCATTTGCACTACCAAAAGT
ATGCGGAGGAAGAGAAACTAGAAGAGCCGCAGGATGAGGGCATAAACTCG
CCGGCCGTTAGTCGTAGTTCGAGTCCCGTGCTGCGAATGAGTACGATGCG
CTATGCACAGCTGAAGTGCCAACGGCAGGAGATTCGGCGAAGCAACAACC
TCGAAAAGCTTCTCACGTTGCAACGTCTGCAACGCTTGCATCAGCAGAAG
CGGCGTCAAATGGCCGAGGTTTGCCGAGAAATAGCCCGCCTCAGTGTACA
CTGTGTGACCAGGAACGAGCTGCGCTTGAAGCCCCGCACGACATCGCTGT
CCGGCGACTACTCCGCCCATCAGTACCATTCCATGGGCCGCGCCCTGAGC
GTGTTGCTCGCCGAGCAGCAGCAGATCGGCGCCCCTCACGCTTTATATGC
CCAGCAGCTACCTGAAGGATAGAGCGCTAGCAGGTCACCAGCGGCTACTT
AAAGCGGGAGCGGGAAACCGTTTCGCCCACGAACCGAGCGCACTCGGTCA
CCTTCTGGAGGGAGATGAAGAGAAAAGGCGGGAGGCATCGCAATGGGGAG
CTTCACAGCCAGCGACACTGAACTGAAAAGAAGTCCTGG
FMO05906.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uvrag-RA | 2520 | CG6116-RA | 164..1317 | 9..1167 | 5325 | 97.9 | Plus |
| Uvrag-RB | 2465 | CG6116-RB | 112..1262 | 9..1167 | 5270 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13287373..13288153 | 382..1167 | 3170 | 96.7 | Plus |
| 2L | 23513712 | 2L | 13286940..13287313 | 9..382 | 1870 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:57:55 has no hits.
FMO05906.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:19 Download gff for
FMO05906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uvrag-RA | 164..1248 | 9..1093 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:58:36 Download gff for
FMO05906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6116-RA | 151..1235 | 9..1093 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:04 Download gff for
FMO05906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uvrag-RA | 164..1248 | 9..1093 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:04 Download gff for
FMO05906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13286940..13287313 | 9..382 | 100 | -> | Plus |
| 2L | 13287374..13288084 | 383..1093 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:19 Download gff for
FMO05906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13286940..13287313 | 9..382 | 100 | -> | Plus |
| arm_2L | 13287374..13288084 | 383..1093 | 98 | == | Plus |
