FMO05908.5prime Sequence
1131 bp (937 high quality bases) assembled on 2008-09-15
> FMO05908.5prime
CAGTCGACATGAAGCTGCCGGTGATTTGTCGCACGTGCGACTCCACGGAC
ACCGACAACCTTCTGAAGCTGGCCACGCCCTCGAAAAAGTATCCGGACAA
GTTGCTTTCGGAGATTTTATGCGAGCTAACCGAAATCAATCTGGATGCAA
CTGGTAGTCAGAAATTTCCGCAATGCTTGTGCAGTGGATGCACCAAAAAA
TTAATGGGTGCCTATTGCTATGTGAAGCAGGCGATGGCCGCCAACGAACT
TCTAATGAAGCATCTAAAGAACGGTGCTGCTCCAACGTCAACCGACTGTC
TGCAGGAGGCGCCGATGGAGCTGTGTGCTGAGCAGCATGTGGAAGTCAAG
CTGGAGACTGAGGATGAGGACTGTGGCGAAAATGATGTTACTATCACTTG
TTCCGAACTACCGGAACCGGACGAAACGGACATGGAGAGCAAAAAGTCGG
TGGACCCACTGACCATGATTGAAACGGTGAAGCTGGAAATGGAACCCAGA
AGCGTGGAGAAGCCAGCGTATGACGATCCCACATCGGACTTTGAAGACGA
AGACTCCCTGGATAATTTGCCACTGTATAATCGCATTCAAAAAGTGGAAA
ACAGGAAGAAAGTCTGTATATAAATGTCACGACTGCCCTAGGAGTTTTAA
ACGATTCGACTTCTTGAAACGCCATGAAATGCGCGTCCATAAGCCAGAAA
CTCGAATTATATGACTGCTCCCCTTTGCATTCGCAAGTTCAGCCGCAGCG
AAACCCCTCGAAGCACACCTTAAAAATTCACCGGGATTCAAACGATCGGC
CAACATTTAGCGAGCACAAGAAGGCCAAGGCTGTGGATTTGAATCTCTGC
AAACCGCATGGCTACAAGCTGATTGAGTGCTGATCCTGCCGAGCCAATAC
AACAAGATTGCTGATCTGCCGCCGGCATTTGGAAGAGCCCCCCGATATTG
TTAGCCTGTGCAGCCGCCAAATATGAAGCCCCATGGACTGGAGAGCTGTT
ATTTCCGATCCAAAGGACCTAGTGAGGACAGTATCAACTTGATTCTCAGG
GATCCTACGGCGGGTATCTACGCGTTTCCTTTTCCATAACGAACAAGCGG
CCTCGAAATGGATTCTGACAGCTCGAAACGG
FMO05908.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18476-RA | 2946 | CG18476-RA | 96..1222 | 4..1125 | 4720 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11677405..11677817 | 553..141 | 2065 | 100 | Minus |
| 3R | 32079331 | 3R | 11676831..11677349 | 1070..554 | 1550 | 93 | Minus |
| 3R | 32079331 | 3R | 11677885..11678021 | 140..4 | 670 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:26:36 has no hits.
FMO05908.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:47 Download gff for
FMO05908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18476-RA | 92..1189 | 1..1094 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:58:38 Download gff for
FMO05908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18476-RA | 89..1186 | 1..1094 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:52 Download gff for
FMO05908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18476-RA | 92..1189 | 1..1094 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:52 Download gff for
FMO05908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11676806..11677349 | 554..1094 | 92 | <- | Minus |
| 3R | 11677405..11677817 | 141..553 | 100 | <- | Minus |
| 3R | 11677885..11678020 | 1..140 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:47 Download gff for
FMO05908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7502528..7503071 | 554..1094 | 92 | <- | Minus |
| arm_3R | 7503127..7503539 | 141..553 | 100 | <- | Minus |
| arm_3R | 7503607..7503742 | 1..140 | 97 | | Minus |
