FMO05912.5prime Sequence
1140 bp (942 high quality bases) assembled on 2008-09-15
> FMO05912.5prime
TTACCAAGTTATCAGTCGACATGATTGACATCACACCCCGCTCCAGTCCA
GGCGATGTGATCGGCGGCGGCGGAGGAGGAGGAAGCAGCAGTGGCTATCA
CCGGGAAACGGCCACCGAATCGGACACCGAACGAGATTTCGGACACTCTG
GCGGCAACGGCGGCGGCAATCACCACAATCAGCGGACAATGCACCAGCAT
GTGCCAACTCACAGTGCCTTCGGCGATCCTATGGACGGAGCACTATCCTT
CTATGGTTCCTCGGACGTGCAAGATGATATTCCTGGCATTGGGCAGTACG
AAGATTTTCACACCATTGATTGGCAGCGGGACATTGCCCGTGATCGGATG
CGACATCGCTACATAGTCAAGAAGCGACAGGACTCCTTGTGGGATCTGAT
AAAGGGTTCCATTGATGCCGGATCTGGCTGGCTATGTGTTTTACTCGTCG
GAATTGCCGCAGGCTGTGTGGCGGGCATGGTGGACATTGGAGCTAGTTGG
ATGTCGGATCTAAAGCATGGCATTTGTCCACCCGCCTTTTGGTTTAACAG
GGAACAATGCTGCTATCCGGCCAAACAGTCAGTATTTGAAGAAGGCAACT
GCTCGACGTGGAAAACCTGGCCAGAGATCTTTGGTTTGGATCGAAATGGC
ACCGGACCATATATCGTCGCTTACATCTGGTATGTGCTGTGGGCTTTGCT
TTTTGCTTCGCTCAGCGCCTCCCTTGTGCGAATGTTTGCGCCCTACGCCT
GCGGATCTGGTATTCCCGAGATAAAGACCATCTTGTCTGGCTTCATTATA
CGCGGCTATCTAGGAAAGTGGACGCTGCTGATCAAATCGGTGGGTCTGAT
GCTGTCTGTTATCCGCTGGCCTCACTTTGGGCAAGGAAGGACCCATGGTC
CACATTGCCAGTTGTAATGGAAACATTATTCCTCACATGTTTTTCCCAAA
ATATGGTCGAAATGAGCCAGAAGCGTGGAGATTCTTTCAGCAGCAGCAGC
GTCATGCGTCTCGGTGGCCTTCGGAGCACATTCGGTGGAGTTCTCTTTTC
GCTGGAGGATGTGTCAACTATTTTCCATTGAAGAACATTGGTGGCGTCAT
CTTTTGTGCACTGATTGGCCGCAATTCGTTTTACAGAATC
FMO05912.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ClC-c-RD | 3962 | CG5284-RD | 592..1702 | 21..1134 | 5120 | 98 | Plus |
| ClC-c-RC | 3718 | CG5284-RC | 592..1702 | 21..1134 | 5120 | 98 | Plus |
| ClC-c-RB | 3319 | CG5284-RB | 193..1303 | 21..1134 | 5120 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16093015..16093490 | 608..1084 | 1890 | 96.3 | Plus |
| 3L | 28110227 | 3L | 16091642..16091859 | 21..238 | 1090 | 100 | Plus |
| 3L | 28110227 | 3L | 16092751..16092959 | 400..608 | 1045 | 100 | Plus |
| 3L | 28110227 | 3L | 16092531..16092699 | 237..405 | 845 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:44:06 has no hits.
FMO05912.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:20 Download gff for
FMO05912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ClC-c-RB | 188..1307 | 14..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:58:31 Download gff for
FMO05912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5284-RB | 188..1307 | 14..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:39 Download gff for
FMO05912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ClC-c-RB | 188..1307 | 14..1140 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:39 Download gff for
FMO05912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16092532..16092698 | 238..404 | 100 | -> | Plus |
| 3L | 16092756..16092959 | 405..608 | 100 | -> | Plus |
| 3L | 16091637..16091858 | 14..237 | 98 | -> | Plus |
| 3L | 16093016..16093542 | 609..1140 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:20 Download gff for
FMO05912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16084737..16084958 | 14..237 | 98 | -> | Plus |
| arm_3L | 16085632..16085798 | 238..404 | 100 | -> | Plus |
| arm_3L | 16085856..16086059 | 405..608 | 100 | -> | Plus |
| arm_3L | 16086116..16086642 | 609..1140 | 95 | | Plus |
